Macrobrachium nipponense (oriental river prawn): 135212491
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Entry
135212491 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135212491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnz03021
]
135212491
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135212491
Transcription machinery [BR:
mnz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135212491
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
135212491
U7-dependent histone pre-mRNA processing factors
135212491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
135212491
NCBI-ProteinID:
XP_064102049
LinkDB
All DBs
Position
41:complement(9187103..9275067)
Genome browser
AA seq
1089 aa
AA seq
DB search
MTETEPTTRERVVELLNTATFMTSEKEKIANLAKVQELIIHLDQKLLDSFFEEVAAFQTD
RNSDVRKFVVGFIEEACKKDVAMLPRLVPNIQILLADNAIAVVKRVIQAAAQLHRATLAW
LSSARTTTPEMEQVWHIITLIKNSIISMIDHDNDGVRTQAIKFLESLVLLQTYKEADSVT
REGEFNLDLVPLTLKAARPRKLEEEARMVLNKLISFQGSLHISSVNLMTCMSSLTIIARA
RPQFLAKIINALEILHANLSAIDEVSVNEQPSHVRKHLKIQMLNLLKHPASYDHHENITT
VLNDLGVTATEVNKSMPSKDQIRKRVRRDKSSTDEGGGGEPSSKKSRIDKDEKKESKEVS
EKQSAIDITQRWLVDKLTTESVASLVMVNMLNLPEEMPPLFSAAYTPITAAGSHTQIQHM
ARLLASQLTAAGIGPGVEQVKEDEVETAHDSDEEVNIRRLVSGYTDEVHTQPAGPVLTPA
GVIGRPMRQKVRTMKLAEVTKPLPSPANNKMQLVLLRRLLRCDKMLLQGSXAKGAMRIVS
VLSGCLSPQECEELEDFILDDMANHMELMLSWLYAEYSVSHEFSKVHSILHSHSKPGTKK
EKNYTQIFTSIISKAIAKRVNKETEEFFLRLFLESPVVPEESVTSLIALGRCAGDMILNS
DLYGPTVRILKNIILWRPPISKPAIRALCLLASHDQEQVREQVIPVILELCKDDESIQEA
VAQVATNYLKYLLLESPPEVLCLHELGRPNKEVEWAETSVKACLFLYLALLPMNQELIYE
LAQVYVKTVNEAKRAILRMLEGPIQHMGMNSPHLLKLVETCPKGGETLITRIIHILTEKA
PPSEALVCRVRELYNRRVSDVRFLIPVLTGLSKKEVIAVLPKLIKLNPHVVKEVFNRLWG
VTLDTGTSPLTPVDLLVALHLIDNEKCDVKTVIKATSLCFAERNIYTAEVLAFVLQQLME
QPNLPTLFMRTVIQTLTHYPKLLGFIMNILQRLIAKQVWKQKKVWEGFIKCCQRATPQSF
TVLLQLPAEQLSDVFSSAPELRTQLGQHLSTLTDNQRAHIPVSLLDVIEENSNGTSEMTS
EPPPPGIKD
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaccgaacctacgacccgtgaaagggttgtagagctgttgaacactgctact
tttatgacatctgagaaggagaagattgcaaatttagccaaggttcaagagcttataatt
catcttgatcaaaagcttctggactccttttttgaagaagttgccgcttttcagactgac
cgcaactcggatgttcgaaaatttgttgttgggttcattgaagaagcatgtaagaaagat
gttgctatgttgcccagattggtgcccaacatacagatcctactggcagacaatgccatt
gctgtagtgaaacgcgtaattcaagcagcagcacaactgcaccgggcaaccctcgcttgg
ctgtcttcagcgcgaaccacaactccagagatggagcaggtgtggcatatcattacactg
attaagaactctataatctctatgattgatcacgataatgatggcgtgagaactcaggcc
atcaagtttctcgagtcactggttttactgcagacgtacaaagaggcagattctgttacc
agggaaggagagttcaacttggatcttgtgcccctaacactaaaggcagctcgtcctagg
aaactggaagaagaagctagaatggtccttaataagctcatctcattccaaggttccctg
catatcagcagtgtcaatttgatgacgtgcatgtcttctctaacaatcatagctcgagcc
cgtcctcagtttcttgccaaaatcatcaatgccttggagattttacatgctaacctttcc
gccattgacgaagtctcagtgaacgagcaaccttcgcacgttagaaaacatttgaagatt
caaatgctaaatcttctgaagcatccagcatcttatgaccaccatgaaaatatcacaact
gttctgaatgaccttggtgtcacagcaacagaggttaacaagagtatgccatcgaaagac
cagatacgcaagagagtgcgaagagacaagtcgtcaaccgatgaaggaggaggaggagaa
ccctcgagcaaaaaatctcgcatcgacaaagatgaaaagaaagagtccaaggaggtttct
gagaagcagtctgctatagacatcacacaacgctggctggtagacaagttgacgactgaa
tccgtcgcatccctcgtcatggttaatatgttgaatcttcccgaggaaatgccaccactt
tttagtgcagcttacacacctattactgctgctggatcacatacgcagatccaacatatg
gctcgactcctggcctcccagttaactgcggctgggataggccctggagtggaacaagta
aaagaagatgaggtagaaactgctcatgacagtgacgaagaggtgaacataaggaggttg
gtgtccggatatacagatgaggtacatactcagccagcaggaccagtcctcacccctgct
ggagttataggaaggccaatgaggcagaaagtccgaacaatgaagttggcagaggtcacc
aaaccattaccatcacctgcaaacaacaaaatgcagctggttctcttgcgccgtctgctc
cgttgcgacaagatgctgttgcagggtagcnacgccaaaggtgcgatgcggattgtgtcc
gtactctcgggatgcctctcgccccaggaatgtgaagagttagaggatttcatccttgat
gacatggctaaccacatggagctcatgttgtcatggttatacgcagaatattctgtctcc
cacgagttctccaaagtccacagcattcttcacagccacagcaaaccaggcacgaaaaag
gaaaagaattacacccagatattcacaagcattatatcgaaggccattgctaaaagagtc
aataaagaaacggaagagtttttccttcgtctcttcctggaaagtccagtggtgcctgaa
gaatccgtcacgtcccttattgctttaggaagatgtgcaggagatatgattctaaatagt
gatttatatggacctacagtaagaatattaaaaaacataatactttggagacccccaata
tcaaaaccagcaattagagcactttgtctgttggcatcgcatgatcaagaacaggtcaga
gaacaggtcataccagttatcctggaactctgcaaggatgatgaaagcatacaggaggca
gtggcacaggttgccacaaattacttaaaatatcttttgttggaaagtcctcctgaagtc
ctctgcttgcatgagttaggacgccccaacaaggaagtagagtgggccgagacatccgtc
aaggcttgcttatttttgtatttggcattgttacccatgaatcaagaacttatttacgag
ttagcacaagtttacgtcaagacagtgaacgaagccaagagggccatattgagaatgttg
gaggggcctatccaacacatgggaatgaactcgccacatttgctcaagctcgttgaaaca
tgcccgaagggaggagaaacacttatcacaaggattattcatatactcactgaaaaggct
ccacctagtgaagcgcttgtgtgtcgtgtcagagaactgtacaaccgacgtgtatcagac
gtaagattcctcatccctgtcttgacaggacttagcaaaaaagaagttatagctgtatta
ccgaaactgattaagttgaatccacatgtcgtaaaagaggtgttcaacaggttatgggga
gtgactttagacactggaacatctccgctaactcctgtggatttattagtggccctccat
ctaattgataatgaaaagtgtgatgtcaagactgtgattaaagctactagcttgtgtttt
gccgaacgtaatatttacacagctgaggtgctggcttttgtgctccagcagctgatggaa
cagccaaatctaccaactctcttcatgaggacagtaattcagactcttactcattatccc
aaactcttaggattcatcatgaatattcttcagaggcttattgcaaagcaggtttggaaa
cagaagaaagtgtgggaaggtttcatcaagtgctgccaacgtgctacaccccagagtttc
accgttctcctccagctcccagctgagcaactttcagatgtattcagcagtgcaccagag
ttgcgcacacagctgggacaacacctttctacattaactgataaccagcgagcacacatc
ccagtaagccttttagatgtaatagaagagaattccaatggtacgtcagaaatgacctca
gagccaccaccaccaggaataaaggattga
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integrated database retrieval system
