Macrobrachium nipponense (oriental river prawn): 135213056
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Entry
135213056 CDS
T09903
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135213056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mnz03041
]
135213056
Enzymes [BR:
mnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135213056
Spliceosome [BR:
mnz03041
]
Complex C
Other components
Step II factors
135213056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
GIPC1_GH2
AAA_22
PWI
nSTAND3
AAA_19
TsaE
PhoH
Motif
Other DBs
NCBI-GeneID:
135213056
NCBI-ProteinID:
XP_064102961
LinkDB
All DBs
Position
42:32548673..32585838
Genome browser
AA seq
1319 aa
AA seq
DB search
MEDLSKLERLSLVSKICVELENHLGINDKDVAEFIISLAEKSKRFDKFKKELEENGGDQF
AESFVESLWRLIQHMMPSITAGPAPVVGKDGSVKYKNDSDKKRALLPFLAIPNDPSVLHM
LDDELKKPVKEENLNDNKEKEGERERSKSKKKKKKKERDSDDEKYSVKTKQEPNDNVNIK
VKKEIDGGVDDLMAFLESHAPSKQKEKSKSRSPDRGRKKKSKSRSRSKERKRNRSRSRSR
SADRKRGHGQNKDRDRDRRGKDRESRRSRSRDRRSRSRDQRSRSRDRYREDKHLSSNRGR
RSRSHDRDYERSRHKDRKDRDRRERSRSHGRERYSRSRSRDRDQERVSNREAFVTHVPDE
NPVVGKIYEGKVTNILNFGCFVQLEGLRRRLEGLVHISQLRREGRVTNVSDVVMRGQKVK
VKVLSFTGQKTSLSMKDVDQGTGKDLNPNVTPFLGNTLQDEDTMRNPDRPMSLMELTKGT
EEEDLATYKRVNRISSPERWELKQMMAANCISKSELPDFDEEQGVIGGENDDEEDVEIEL
VEEEPAFLRGYGRVREELSPVRIMKNPDGSLAQAAMMQSALAKERREVKMAQRESDIDST
PSNLGQNWNDPLPEIQRNDPTMSRGMPSQQQEVPEWKRHVTGGTRGSYGKKTNMSLLEQR
QSLPIFKLREQLIKAIHDNHILIVVGETGSGKTTQITQYLAEAGFTAKGKIGCTQPRRVA
AMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSSETVIKYMTDGMLLRECLIDPDMSAYACI
MLDEAHERTIYTDVLFGLLKQAVAKRPELKLIVTSATLDAVKFSEYFNQAPIFTIPGRTF
PVEILYTREPETDYLDAALITVMQIHLSEPPGDILVFLTGQEEIDTACELLYERMKALGS
DVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGVYYVVDPGFVKQ
KVYNPKTGMDSLMVTPVSQAGAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTNVPDIQR
TNLAATVLQLKAMGINDLLGFDFMDPPPTDAMVMALETLHSLSALDDEGLLTRLGRRMAE
FPLDPNLSKMLIMSVHLQCSDEILTIVSMLSVQNVFYRPKEKQALADQKKAKFNQAEGDH
LTLLAVYNSWKNNKFSNAWCYENFVQMRTLKRAQDVRKQLLGIMDRHKLDVVSCGKNVAR
AQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVVYHELVQTTKEYM
REVTTIDPKWLVEFAPSLFKQGDPTKLSKYKKNQRLEPLYNKYEEPNSWRISRVRRRRN
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggaggatctgtcaaaactcgagcgtttgtcgcttgtttccaagatctgcgttgaactg
gagaatcacttgggaatcaatgataaagatgttgctgagttcatcatatcacttgcggag
aagagcaaacgttttgacaaattcaaaaaggaacttgaagaaaatggaggtgaccagttt
gctgaatcatttgttgaaagtctttggcgactaatacagcacatgatgccatcaataaca
gctggtccagcacctgtagtaggtaaagatggttcagtaaagtataaaaatgacagtgac
aagaagagagctttgcttccatttcttgctatacctaatgatcccagtgtcttacatatg
ttagatgatgaacttaagaagccagtgaaagaagaaaacctcaatgacaacaaagagaaa
gaaggcgagcgagagcgcagcaagagtaaaaagaagaaaaagaagaaggagagagattct
gatgatgaaaagtattcagttaagacgaaacaggaacccaatgacaatgttaatatcaaa
gttaaaaaggagattgatggtggtgttgatgatcttatggcctttttagaatcccatgct
ccatccaaacaaaaggagaagtcaaagagcaggagtccagatagaggaagaaagaaaaag
tcaaagtcaagatcgcgatctaaagaaagaaaacgaaaccgcagtaggagtcgatcaagg
tctgcagacaggaagagaggccatggccagaacaaagatagagacagagataggcgaggt
aaagacagggaatcaaggcgatccagaagtcgggatcggcgatctagaagtcgggatcag
cgatctagaagtcgtgatcggtatcgggaagataaacatttgagcagtaacagagggaga
aggagccgtagtcatgacagagactatgaaagaagtagacataaagacagaaaggaccgt
gacagaagagaaagaagcaggagccatgggagagagaggtatagtaggagtaggagcaga
gatcgtgaccaagaaagagttagtaatcgagaggcctttgttactcatgtcccagatgaa
aatccagttgttggaaagatttatgaaggtaaagtgacaaacatcttgaattttggatgt
tttgtccagcttgaaggtttaagacgtaggcttgaaggtctggtacacatttcacagtta
cgtcgggaaggacgagttactaatgtgtctgatgttgtaatgcgcggccaaaaagtaaag
gttaaagtgttgtccttcacaggacagaagacttcattgtctatgaaggatgtggatcaa
ggaactggcaaagaccttaatccaaatgtaactccttttttaggtaacacccttcaagat
gaagataccatgaggaaccctgacagacccatgtctctcatggaacttactaaaggtact
gaggaggaggacttagcaacatacaagcgtgtcaaccgaatctcttctcccgaacgttgg
gaactaaaacaaatgatggctgcaaactgtatcagtaaatcagagttacctgactttgat
gaagagcaaggagtcataggaggagagaatgatgatgaggaggatgttgaaattgagtta
gttgaagaggaacctgccttcttgagaggctatggtcgagtaagagaagaacttagccca
gtcagaataatgaagaatcctgatgggtctctcgcacaggctgctatgatgcagagtgct
ttagcaaaagaacgtagggaagttaagatggcacagagggagagtgacattgactctact
ccatctaatttagggcagaattggaatgatcctctgccagaaattcaaagaaatgatcct
acaatgtctcgtggaatgccttcccaacagcaagaggtaccagagtggaaacgtcacgtt
acagggggaacaagaggctcttatggtaaaaagactaacatgtctcttttggaacagcgg
caaagcttgccaatcttcaaactccgagaacagctaattaaggctattcatgataatcac
attctcattgttgttggggagacaggttcaggaaaaaccacacaaataactcaatatctg
gctgaagctggatttactgcaaagggaaagataggatgcacacagcccaggagagttgca
gctatgtctgttgctaagagagtgtcggaagaatttggttgtaggttaggccaagaggtt
ggatacactattcgatttgaggattgcacaagttcggaaactgttattaagtacatgaca
gatggtatgttactcagggaatgtctaattgacccagatatgtcagcttatgcttgtatt
atgttggatgaagcccatgaaaggacaatttacactgatgttttatttggtcttttgaaa
caagcagtagcaaagaggcctgaacttaagcttattgttacatcagccaccttggatgct
gtaaagttttcagagtattttaaccaagcgcccattttcacaatccctggtcgaactttc
ccagttgagatcttatacactcgagaacctgagacagactacttagatgctgctttgatt
actgtgatgcagattcacttatcagaacctcctggagacattcttgttttcttgactgga
caagaagaaattgatactgcatgcgaactgctgtatgagcgaatgaaagctttagggagt
gacgtaccagagctcatcattcttcctgtgtattcagcattgccctcagaaatgcaaaca
aggatatttgaaccagcaccaccaggttcccggaaagttgtcatagctacaaacattgct
gagacctcattaaccatcgatggtgtatattatgttgtggatccaggctttgtgaagcaa
aaagtatataatccaaaaactggaatggattcgttgatggtaactccagtatcacaggct
ggagccaagcagagagctggacgtgctgggaggacaggaccaggtaaaacgtatagacta
tataccgagagagcttatagagatgagatgcttcctacaaatgtacctgacattcagaga
actaaccttgctgcaactgtactacagcttaaagcaatgggaataaatgatcttttagga
tttgattttatggaccctcctccaacagatgctatggttatggccttagaaacgcttcat
tctctgagtgctctggatgatgaaggtttgctcacacgtctggggaggagaatggcagaa
tttcctctggatccaaacctgtccaagatgcttattatgtctgtccacttacagtgttct
gatgagattctcactattgtttcaatgttgtctgtgcagaatgtattttataggccaaag
gagaaacaagccttagctgatcaaaagaaagcaaagtttaaccaagcagaaggggaccat
ttgaccttacttgcggtctataattcctggaagaacaataaattttctaatgcttggtgc
tacgagaactttgttcagatgcgaactttgaaaagggcacaggatgtgagaaagcagctt
ttgggtattatggataggcataaattagatgtagtgagctgtggcaagaatgtagctaga
gcacaaaaagccatctgctcaggcttcttccgtaatgcagccaagaaggacccccaggaa
ggttatcgcacactggttgattctcaagtggtttatattcatccgtcatctgctctcttc
aataggcaaccagaatgggttgtgtaccatgaattagtgcagactacaaaagaatacatg
cgtgaagttactacaattgacccgaagtggttggtagaatttgcaccttcactgttcaaa
cagggtgatcctacgaaactcagtaaatacaagaaaaaccagagactggagccgttgtac
aacaaatacgaggaaccaaactcttggagaatatctcgagttcgcaggagaagaaactga
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integrated database retrieval system
