Macrobrachium nipponense (oriental river prawn): 135214815
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Entry
135214815 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3-like
KO
K14323
protein CASC3
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03013
Nucleocytoplasmic transport
mnz03015
mRNA surveillance pathway
mnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135214815
09122 Translation
03013 Nucleocytoplasmic transport
135214815
03015 mRNA surveillance pathway
135214815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135214815
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135214815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
135214815
NCBI-ProteinID:
XP_064105264
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All DBs
Position
46:complement(25835309..25879949)
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AA seq
821 aa
AA seq
DB search
MAERRRRRKVQSGEDSEELSDDSDEERLPGQRKSLAGSDGGESEYESADDEELGEEEEEE
DDELLIMPDGVGIGDENKQLDDDEDRKNPQYIPKKGTFYEHDDRTAAEEDVEKPPEEPTV
KKEASKKKVWKEDNKWNHDKFNEFDQAPKTREELIAVYGYDIRNEEGPPRARRRRRYGRG
PNKYTRNWEDLDAYAKPVRGGTVRGGGPGRGGNRSLAGSKKALYNNEEFPALNSTQQKYQ
GSEQDDHRSGAEHHSPKNDIQRAPGDEHLIIDNDVSKMHQQQQQMQMQHQHNLQNRNSIS
SPQFQDLKTDNMGGRGRGGKGRGRGAGRGLSRDQHRHIDERSANNHDMHPGGRGNRGGYQ
QKGPVQHQTHVDDITLDMKNVNINTQNRDERHKKSRGGGNVENRRNTVPPRLQESAAAAA
NLHGRGRGSNSSPGGDGSASSRPKRYSSQRQRSIPDQPVPPFQQQQGYIDPALEAGYQGG
VYEGGVNPATSHTVSAPPSQLPIAGGAPHSFVPPAFTSPPTFPPEPFLGRPPAPRMFPPV
TQSPHLFTGPPLGAPPVGAPQPPGPPVTGPPFIPHEINYAAHPGPQPGPHAGPLPGASPL
AGPHPPQFPPFQGFTPGPVSQPGEIYSNGVTYYNTESQQQLPRNSVPLQKRPKAAIPIVP
PPEREQRQDGSFSRVEGSQDDQQFADSTNVPESALQESSEMEIPAETESNPEEDQEVVIE
GQVERQSEDQTATTEDVQQVESVADPKVTEEPASKSPENAAAQDKPETSIQPIESELSET
LQKPEENSIDNLESKDPEKEKASEGQPVEELKTTDGSVEAS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggcggagagaagacggagaagaaaggtacaaagtggggaagattcggaggaattatcc
gatgattcagacgaggagcgtcttcctggtcagcgaaagtctcttgcgggaagtgatggt
ggagagagtgaatatgagagtgctgatgatgaagagcttggcgaggaagaggaggaggaa
gatgatgaacttctcatcatgccagatggggttgggataggggatgagaacaagcagctg
gatgatgatgaggatcggaaaaatccccagtacatccccaagaaaggcactttttacgaa
catgatgaccgaactgcggctgaggaagatgtagaaaaaccgcctgaagaacctactgta
aagaaggaagccagcaagaaaaaagtgtggaaggaagacaacaagtggaaccatgacaaa
ttcaatgaatttgatcaggccccaaaaactcgcgaggagctcattgctgtgtatggctat
gacatcagaaatgaggaaggccctccacgtgctcgccgtagacgtcgttacggccgtgga
cccaataaatatacacgcaattgggaagatcttgatgcctatgccaaacctgtcagagga
ggaactgtccgagggggagggcctggaagaggaggaaacaggtctttggctggtagcaag
aaagctctttataataatgaagagttcccagccttaaattccacccagcagaagtaccaa
ggcagtgaacaggatgatcacagaagtggtgctgaacatcattcacctaaaaatgacatc
cagagagctcctggagatgaacatttaataattgacaatgatgtatcaaaaatgcatcag
cagcaacagcaaatgcaaatgcagcatcagcataatctacagaacaggaattctatatca
agtccccagttccaagacttgaaaactgacaacatgggtggacgaggaagaggaggaaaa
ggcagaggtagaggtgctgggagaggattaagtagagatcaacataggcatattgatgag
agaagtgcaaacaatcatgatatgcatcctggaggacgtggaaatcgtggtggttaccag
cagaaagggccagtgcagcatcaaacacatgttgatgatattacattagacatgaagaat
gtaaacataaatactcaaaatagagatgaaagacataagaaaagtagaggaggtggaaat
gtagagaacagaagaaacactgtacctccacgactgcaggagtctgcagcagcagcagct
aatcttcatggcagaggacggggtagtaattcttcaccaggaggagatggttctgcttcc
tcacgacctaagagatactcttcacagagacaacggtcaattcctgaccaaccagtgcct
cccttccagcaacagcaaggatatattgatccagcactggaagccggttatcagggagga
gtgtatgagggaggggtaaacccagccaccagccatacagtatcggcacctccctcccaa
ctcccgattgctggtggtgctccccattcctttgttccaccagcctttacctctcctccc
acttttcctccagagccattcctggggagaccaccagcgcctcgcatgttcccgccagtc
acgcagtcacctcatctcttcactggtcctcctctaggtgctcctccggtgggtgcaccc
cagccacctggtccccctgttactggtccaccatttataccccacgaaattaactatgct
gctcaccctggcccccaacctgggccacatgcaggccctctcccgggagcatctccgcta
gcaggcccccacccacctcagttcccgccattccagggcttcaccccaggccctgtgtca
caacctggtgaaatatacagcaatggtgttacctattataatactgagagtcagcagcag
ctaccgagaaacagtgtacctctgcaaaaaaggccaaaagcagccatcccaatagttcca
cctcctgaacgagaacaaagacaggatggatcattttctcgagtagaaggaagtcaagat
gatcagcaatttgcagactctactaatgttcctgaatcagctctccaggaatcttcagag
atggaaattcctgcagaaactgaatcaaacccagaggaagaccaggaggttgtaattgaa
gggcaagttgagagacaaagtgaagatcagactgctacaacagaggacgtacaacaggtt
gagtctgttgcagaccctaaagttacagaagaacctgccagtaaatcaccagagaatgct
gcagctcaggacaaacctgaaactagtatccagcctatagaaagtgaactgtcagagaca
ctgcaaaaaccagaggaaaatagtatagataatcttgaaagtaaagatcctgaaaaggaa
aaagctagtgaagggcagccagtggaagaattaaaaactactgatggctctgtagaagca
tcttaa
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