KEGG   Macrobrachium nipponense (oriental river prawn): 135215627
Entry
135215627         CDS       T09903                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mnz  Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03030  DNA replication
mnz03410  Base excision repair
mnz03420  Nucleotide excision repair
mnz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mnz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    135215627
   03410 Base excision repair
    135215627
   03420 Nucleotide excision repair
    135215627
   03430 Mismatch repair
    135215627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mnz03032]
    135215627
   03400 DNA repair and recombination proteins [BR:mnz03400]
    135215627
Enzymes [BR:mnz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     135215627
    6.5.1.6  DNA ligase (ATP or NAD+)
     135215627
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     135215627
DNA replication proteins [BR:mnz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    135215627
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     135215627
DNA repair and recombination proteins [BR:mnz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     135215627
   NER (nucleotide excision repair)
    Other NER factors
     135215627
   MMR (mismatch excision repair)
    Other MMR factors
     135215627
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 135215627
NCBI-ProteinID: XP_064106612
LinkDB
Position
5:126691107..126881018
AA seq 1007 aa
MVQKSILSFFSATKVKKPEGESENSTPEQKPEEKGSKGKSTRGSKGKSTQEDSPIKAVPR
KKARVIGSDSEDEAQPSTSTSPSKSDEEKENKKSTPDGKGKKGTGKGKQGKGSPIKKSTV
QNGKMEEENGVKDQAKESEEDDAISSPSVSSSSDNSKIKSSNTSVGFSPETVPPLRKTAR
KQMKRKSDSMESKQQNMIKKLKTEDSKKEDKAESSPQVADGEKAQSDGVQKAEKEDGKEV
PMDVDNCEKDSEGKNEKTHTTPSTKKPIHSFFEPRPSEKDSKSKSPKAATKEEPESREKE
KSSPVKENNCNKQESKNKETSKVDKKPPKVEKKTVVNPFAPKNTSSADPGSTYNPGQEKY
DPIKDAFWKHGEKVPYLALAKTFELIEGISGRLKTIEVLSNFLRSVIVLSPDDLLYCVYL
CLNKVAPAFEGTELGVGDMILMRAIAQTSGRSVERIKQDTEEKGDLGIVAENSRSNQRLM
FQPAKLTVRGVFEKLREIALMTGNAVRGNDSLKDGSKSKGMFVACRFSEARYLIRSLGGK
LRIGLAEQSVLQAIAQACYLTPPGQDFPPEILNTGKGVAPDKLKAQFENYGLILKTTYCE
FPNYDKIVEVLLKEGLEELPKHCKLTPGIPLKPMLAHPTAGVSEVLKRFENAKFTCEFKY
DGERAQIHLKEDGSIRIYSRNQEDNTSKYPDIISRFKNAVGENVKSCVIDSEAVAWDQEK
KQILPFQILSTRKRKDADEKEIKVQVCVFPFDLLYLNGEPLVREPFEKRRALLKENFHEV
EGEFIFAKSMDSTNTEDIEEFLEESIKGNCEGLMVKTLDVDATYEIAKRSRNWLKLKKDY
LDGVGDTIDAVVIGGYWGKGKRKGAYGCFLLACYDPDNEEFQSLCKIGTGFTEEQLQQHT
TFLKDHVIEKPKSYYRYDSSHEPDTWFEPVQVWEVKCADLSISPNHKAAAGVVDPEKGIS
LRFPRFLRIREDKTPENATSSSQIADLYNSQAQIQNKNSSSKDEDFY
NT seq 3024 nt   +upstreamnt  +downstreamnt
atggtccagaaatcaattttgtcattcttttctgcaactaaagtaaagaagcctgaaggt
gaatcagaaaacagcacaccagagcaaaaaccagaggagaaaggatctaaagggaagtct
accagaggatctaaagggaagtctacccaggaagactccccaatcaaagcagtgccacgt
aaaaaggcgcgagttattggaagtgatagtgaagatgaagctcaaccatcaactagcaca
tcacccagtaaatcagatgaggagaaagaaaataagaaaagtactccagatggaaaaggg
aagaagggaactggcaaaggaaaacaaggaaagggatcgccaataaaaaaaagtactgta
caaaatggcaagatggaagaggaaaatggtgtcaaggatcaagcaaaggagagtgaggaa
gatgatgctatttctagtccttctgtttcatcatctagtgacaactctaagataaagagt
tccaatacatctgtaggtttctcaccagaaacagtgccgccattaaggaaaacagccagg
aaacaaatgaaacgtaaaagtgacagtatggaatccaagcagcaaaacatgattaagaag
ttaaaaacagaagatagcaagaaagaggataaggctgaatcctctcctcaggtagctgat
ggggagaaggcacagagtgatggagtacaaaaagcagaaaaggaagatggtaaagaggta
ccaatggatgtagataattgtgaaaaagattcagaaggcaagaatgaaaagactcatacg
acacctagcacaaagaagcccatccacagttttttcgagccccgacctagtgaaaaagat
tctaagagtaaatcaccaaaggctgcaacaaaagaagaaccagagtcacgtgagaaggaa
aaatcttcaccagttaaagaaaataactgtaacaaacaggagagcaaaaataaggagact
tctaaagtggacaaaaagccaccaaaagtcgaaaaaaaaacagttgttaacccatttgct
cctaagaacactagttctgcagatcctggctcaacttacaatccaggacaggaaaaatat
gatccaataaaagatgcgttttggaaacatggtgaaaaggtgccatatttggctttggca
aagacatttgaattgattgaaggcataagtggtcgccttaaaaccatagaagttctttcc
aatttcttgcgatcagttattgtcctctcaccagatgatcttttgtattgtgtgtatttg
tgtcttaataaagtagcccctgcatttgaaggtactgaattgggagttggggacatgatt
ttgatgcgtgcaattgctcaaacatctggtcgaagtgtagagaggatcaagcaggatact
gaagaaaagggagatttgggaatcgtagctgaaaactccagatcaaaccagaggctgatg
ttccaaccagcaaaacttactgttcgaggtgtatttgagaaactccgggaaattgccctc
atgactggaaatgctgtaagaggaaatgatagtttgaaggacggatcaaaatcaaaggga
atgtttgttgcttgccgcttttcagaagctaggtatcttattcgttctcttggtgggaaa
ctacgaattggtttggcggaacaatctgtactccaggcaattgcacaagcttgttattta
acaccccctggtcaagacttccctccagagattttgaatactggcaagggagttgctcca
gataagctgaaagcccagtttgaaaattatggactaatcctgaagactacttattgtgaa
ttccctaattatgacaagattgtagaagtattgttgaaggaaggactcgaagagttacca
aagcattgtaagttgactccaggtattcctttgaagcctatgttagcacacccaacagct
ggtgtgtccgaggtcctaaaacgctttgaaaatgcaaagttcacctgtgaatttaagtat
gatggagaaagagctcagatacatttgaaagaagatggttctatcagaatctacagtaga
aaccaagaagacaacacctctaaatatccagatatcatctctagatttaaaaatgctgtt
ggtgaaaatgtgaagtcatgtgtaattgattcagaagcagtggcttgggaccaagagaag
aagcagattctacccttccagattcttagcactaggaaaagaaaagatgcagatgagaaa
gagatcaaagtacaagtttgcgtgtttccatttgatcttttgtatctgaatggtgaacct
cttgttcgggaaccttttgagaaacgccgtgctcttttgaaggaaaatttccatgaagtc
gaaggagagtttatattcgccaaaagtatggattcaacaaatactgaagatattgaggaa
ttcttagaagagtctattaaaggtaattgtgaaggcctgatggtgaaaacacttgatgtt
gatgctacttatgaaatagcaaaacgttcccgcaattggctgaagttgaagaaggattat
ctagatggggttggtgataccatagatgcagtagttattgggggctactggggaaaagga
aaaagaaagggggcctatggctgtttcctccttgcttgctatgatccagataatgaagag
tttcaatctctctgcaagattggaactggatttactgaagagcaacttcaacaacacact
acgttcctcaaagaccatgttatagaaaaaccaaagtcttactacagatatgatagcagc
catgaacctgatacctggtttgaacctgtacaagtgtgggaagtcaagtgtgctgatctt
tcaatatcaccaaaccacaaagctgctgctggtgttgttgatccagagaaaggaatctcc
ttgaggtttccaaggtttctgcgtatcagagaggacaaaacaccagaaaatgctacaagt
tcaagtcaaattgctgacctgtacaacagtcaagctcagattcaaaataagaattcgtct
agtaaagatgaggacttttattga

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