Macrobrachium nipponense (oriental river prawn): 135216419
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Entry
135216419 CDS
T09903
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135216419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135216419
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135216419
U7-dependent histone pre-mRNA processing factors
135216419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Methyltransf_4
Motif
Other DBs
NCBI-GeneID:
135216419
NCBI-ProteinID:
XP_064107834
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Position
6:37925026..38142647
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AA seq
737 aa
AA seq
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MTSIVKFEGVWGVGDETPHCYLLTVDDFTFLLDCGWDEKFDKSYIDRLTKILPKVDCVLI
SYPDPLHMGALPFLVGKGQLSCPVYATIPVFKMGQMFMYDWFQSHHNYDLVEHFTLDDVD
TAFELITQVKYNQSIPMRGKGIGLNISAQPAGHMIGGSIWRILKDGEGDIVYAVDFNHKK
ERHLGGCELDKITRPSLLITDSFNFSYRQERRRHRDEKLVAQLQETCRNGGNVLIATDTG
GRVLEMTHMLEQMWSTRESGLSAYSLAILSNTGYHVIHFAKQMIEWMSEKLTKAFDSLRT
NPFSFKHLKFCHNLTDLSRLPSPKVVLASFPDLECGYARELFVQWATNPKNTIILTSRTG
PDTLARRLIDNPSIRTFKLLEKRRVKLEGVELDEYYRQQREKEQHEHRIKMEEVESSSDS
EGEEGLEAGKHDIIVLYEKAGTHSMFRSRKHHPMFPFHEEKVRSDDYGEFINLDDYDIAA
MREENKENLELQMPYEEEEIMEMEEAPTKCVSQTVTVRVTAQVLFIDFEGRSDGESIRKI
VEAMHPLRVILVRGSQTDLQAFAQNIRSMTKAKVFTPSLGEIVNASMESHIYQVKLAESL
VSSLVLQQAGRDVEVAWVDGTVSFPTENTDENIEESERQVISSENQLDSEMPTLSVVPPE
EAPYHDPVFINDVRLSEFKQVLSRAGISSEFNAGILWCSNGTLALKKQDSGGISLEGPLS
ADYYEIRELLYQQYAIL
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatagtaaaatttgaaggggtgtggggtgttggagatgaaaccccacactgc
tatttactcacagtggatgactttactttcttactggactgtggctgggatgaaaagttt
gacaagagctacattgatcgtttaaccaaaattcttcccaaggttgattgtgtgttgata
tcatatcctgatccccttcatatgggtgccttaccatttttagttgggaagggtcagcta
tcatgcccagtttatgctacaattccagtctttaaaatgggtcaaatgtttatgtatgac
tggtttcagagccatcacaactatgatcttgtggagcatttcactctggatgatgtagat
acagcatttgaactcattactcaggtcaaatataaccaaagtattccaatgagaggcaaa
ggaattggcctcaatatctcagcacagccagctggccatatgattggtggctcaatatgg
agaattctaaaggatggtgaaggggatattgtttatgctgtggacttcaatcacaaaaag
gagagacatttaggaggctgtgagttggacaaaataacgcgaccatcattgcttataaca
gattctttcaatttttcttatagacaggagcgtagacgccacagagatgagaagcttgtt
gctcagcttcaggaaacttgtcgtaatgggggaaacgttttgattgcaactgacacagga
ggcagagttctagaaatgactcacatgttagaacagatgtggagtacccgtgaaagtggc
ttgtctgcatactccttagcaattctgtcaaacacaggctaccatgtcatacattttgca
aagcaaatgattgaatggatgagtgaaaagttgactaaagctttcgactctctgcgtaca
aatccctttagtttcaaacatctcaagttttgtcacaatctcacggatctcagtcgtctt
ccatcaccgaaggtagtcctggcaagctttcctgaccttgaatgcgggtatgcccgagag
ctttttgtccagtgggctaccaatccaaaaaataccataatactaacatccagaactggt
ccagacactttggctaggagactcatcgataatccttctataaggactttcaagttgctt
gagaaacggagagtcaagttagagggtgtagagcttgatgaatattatagacagcaaagg
gagaaagaacagcatgagcatagaattaaaatggaggaagttgaatcatcaagtgacagt
gaaggcgaagaaggtttagaagctggaaaacatgatattattgttttgtatgaaaaagca
gggacacacagtatgtttagaagtcgaaaacaccatcctatgtttcctttccatgaagag
aaggttcgaagtgatgattatggagaatttattaatttggatgactatgatattgcagca
atgagagaagaaaataaagaaaatttagaattacagatgccctatgaagaggaagagatc
atggagatggaagaggcaccaaccaaatgtgtttctcagacagtaacagttagagtcact
gcacaagtcctttttattgattttgagggtcgtagtgatggagaaagtatacggaaaata
gttgaggcaatgcatccattaagagttattttagtacgtggatctcagacagatcttcaa
gcctttgcacaaaatattaggagcatgacaaaggccaaggtgttcacaccaagtttagga
gaaattgtcaatgcttccatggagtcacatatttatcaggtcaagttagcagaatcttta
gtatcatcactggtgttacaacaagctggtcgggatgttgaagttgcttgggttgatggt
actgtttcatttcccacagaaaatactgatgaaaatatagaagaatcagagagacaagtt
atatccagtgaaaaccagctagacagcgagatgcctacattgagtgttgttccaccagaa
gaggctccttaccatgatcctgtattcatcaacgatgttcgcttgagtgaatttaaacaa
gttctcagccgagcaggaattagttcagagtttaatgccggtatactttggtgttcgaat
ggaacattagcactaaaaaagcaagattctggtggaatatcattggaagggcctctgagt
gcagattattacgaaatcagggaactcctatatcaacaatatgcaattttatag
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