Macrobrachium nipponense (oriental river prawn): 135217673
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Entry
135217673 CDS
T09903
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mnz03016
]
135217673
Enzymes [BR:
mnz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135217673
Transfer RNA biogenesis [BR:
mnz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135217673
Prokaryotic type
tRNA splicing ligases
135217673
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
135217673
NCBI-ProteinID:
XP_064109712
LinkDB
All DBs
Position
7:111929608..112046986
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AA seq
656 aa
AA seq
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MVVRQYNDELKYLERLTPNCWRIKKGFQPNMNVDGIFYVNDHLEKLMFDELRNYCRPGAI
GGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMDDPKAVVSPGGVGFD
INCGVRLLRTNLTEADVTPVKVCIYAAIALASEELEMCLLKRSRIKRHCLNSYMTSQYQD
FLLTKRVLGLAQAAFGAFDRAPVSPASTLQLSVQSESVRLPKVILSTLAKKALREVDSFS
YRPFHLLSRRLCGPLFEEHLQDILEVVSFLDWSVDTLATKILEYPDFPPNIGSDLLDVLF
CSYKEPMHFNASGFHLLLTTTAYFKKLMKNYITGYVWAEDKEHCEEYGRMAQADPAKVSM
RAKKRGLPQLGTLGAGNHYAEIQVVDEIFDKWAASKMGIEQKGQICVMIHSGSRGFGHQV
ATDALVAMEKAMKRDGIDTNDRQLACARIKSQEGQDYLKSMAAAANFAWVNRSSMTFLSR
QAFAKMFHSSPDDLDMHVIYDVSHNIAKIEQHWIDGKLRTLLVHRKGSTRAFPPHHPLIP
VDYQLTGQPVLIGGTMGTCSYVLTGTEQGMMETFGSTCHGAGRALSRAKSRRNLDYTDVL
NKLQEMGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggtggtccgacagtacaatgatgagctcaaataccttgagcgcctcacaccaaactgt
tggcgtatcaagaaaggcttccaaccgaacatgaatgtggatggaatattttatgttaat
gatcatcttgaaaagcttatgtttgatgaactgcgaaattactgtcgtccaggagctata
gggggtttccttcctggcatgaagcaaattgcaaatgttgctgctttgcctggcattgtt
gggaagtctgtaggcttgcccgatgttcattcaggatatggctttgctataggaaatatg
gctgcctttgacatggatgatcctaaggctgttgtttctcctggtggtgtcggttttgac
attaattgcggagtccgactacttcgaacgaatctcaccgaggcagatgtaactcctgta
aaggtatgcatttatgcggccatagcccttgctagtgaggaactagaaatgtgcctttta
aaacggagtaggattaaaagacattgtctaaattcgtacatgacctctcagtatcaggat
tttctgctgacaaaaagagtgcttgggctagcacaggcggcttttggtgcttttgacagg
gctcctgtttctccagcttcgacacttcagttgagtgttcaatctgaatcagtcagatta
cctaaagtgattttatcaacgttagcaaagaaggctcttagggaagttgatagctttagc
tatcgaccttttcacctgcttagtaggagactatgtggaccactttttgaagaacacctt
caagatatattggaagttgttagctttttagactggtcagtagacacactggctacgaaa
attctggaatatcccgattttccacccaacataggttcagaccttctagatgttctcttc
tgttcgtacaaagagcccatgcactttaatgcaagtggatttcacttgctgcttacaaca
acagcatattttaagaaactcatgaaaaattacataacaggttatgtttgggccgaagac
aaagagcactgtgaagaatatggacgaatggctcaagctgaccctgccaaagtatctatg
agggctaagaaacgaggactaccacagcttggaacactaggagctggtaaccattatgca
gaaattcaagttgtagatgaaatttttgacaaatgggctgctagcaagatgggaatagaa
cagaaaggtcaaatttgtgtgatgattcactcaggttcccgaggttttggtcatcaagtt
gccacagatgctcttgttgctatggagaaagcaatgaaaagggatggaattgacaccaat
gatcgccagttggcgtgtgccagaataaagtcacaagagggtcaagattatttaaaatca
atggctgcagctgcaaattttgcctgggttaatcgttcatctatgaccttcttgagtcgc
caagcctttgccaaaatgtttcacagtagtccagatgatctcgatatgcatgttatttat
gatgtttcccataatattgccaaaattgaacaacactggattgatggcaaacttcgaaca
ttattggttcatcgaaagggatcgacaagggcattcccaccccaccatccattgatccca
gtagattatcaactgactggacaacctgtccttattggtggaacaatgggaacttgttcc
tatgtgttgactggtactgaacaaggcatgatggaaacgtttggatcaacttgtcacggc
gctggacgagctctttccagggcaaaatctcgcaggaatcttgactatacagatgtgctt
aacaagttacaagaaatgggcattagtatcagagtagcatctcctaaattagtcatggaa
gaggcacctgaatcttacaagaatgttacggatgtagtggatacctgtcacgctgcaggg
attagtaaaaaatgtattaaactacgacccattgcagtaattaaaggctaa
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