Macrobrachium nipponense (oriental river prawn): 135218298
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Entry
135218298 CDS
T09903
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03015
mRNA surveillance pathway
mnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135218298
09123 Folding, sorting and degradation
03018 RNA degradation
135218298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135218298
03041 Spliceosome [BR:
mnz03041
]
135218298
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135218298
mRNA cycle factors
Stress granule specific factors
135218298
Spliceosome [BR:
mnz03041
]
Complex C
Other components
Complex C specific factors
135218298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_Nup35
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
135218298
NCBI-ProteinID:
XP_064110591
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All DBs
Position
19:73961277..73973465
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AA seq
645 aa
AA seq
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MNPSGPSYPLASLYVGDLHADCTEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS
AFGNILSCKVATDEMGNSKGYGFVHFETEEAARNAIQKVNGMLLNGKKVYVGKFIPRAER
EKELGEKAKRFTNVYVKNFGEDLDDDKLYEVFSAFGKISSHRVMVTDDGKSKGFGFVAFE
EPEAAEKACEEYNGKELNGKIIYVGRAQKKGERQAELKKKFELLKIERMNRYQGVNLYIK
NLDDSIDDERLRKEFSNYGTITSAKVMTEDGRSKGFGFVCFSTPEEATRAVTEMNGRILV
SKPLYVALAQRREDRKAHLASQYMQRVAGMRMQQMGQMFQPGGTSYFMPTMPQAQRFYSP
QMAQIRATPRWPAQPTAQVRAGAQATTTFPMQAAPFRTAPRQAQPGPRNVRPMAAAAAAA
QQQPIPNLLQAGRPVAPNAGGVPPAAISNAARASNYKYTNNMRNPPAVSGGGPAAAAAVA
PVAQPAVHIQGQEPLTPSMLASAMPQEQKQMLGERLFPLIREIYPELAGKITGMLLEIDN
SDLLHMLEDRNSLKNKVEEAVAVLQAHQAKQQVAAVVAAQKKEDV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctagtggacctagttaccctcttgcttccttgtacgttggtgatctccatgca
gattgcactgaggctatgctttttgagaagttctcatctgctgggcctgtgttatccatc
agagtatgtcgtgatatgatcactagaaggtctctgggctacgcatatgtaaacttccag
caacctgcagatgcagagagagctcttgatacaatgaattttgatgtaatgaagggtaag
cccatccgtatcatgtggtctcaacgtgatccatctttaagaaagtccggggtaggaaat
gttttcatcaagaatttagataagtcaattgacaataaggcaatgtatgacaccttcagt
gccttcggaaatatccttagttgcaaggttgcaacagacgagatgggtaattctaaagga
tatgggtttgtccactttgagacagaagaagctgcgcgcaatgctatacaaaaagtaaac
ggcatgttgctgaacggtaagaaagtgtacgtaggaaagttcatcccaagagctgaacgt
gaaaaagaactgggagagaaagccaaacgcttcactaacgtgtatgtcaagaactttggc
gaagatttggatgatgacaagctctacgaggtattcagtgcttttggcaagattagcagt
cacagggttatggttactgatgatggaaagagcaaaggatttggttttgttgcctttgag
gaaccagaagctgctgagaaggcttgtgaggaatataatggcaaggaattgaatgggaaa
atcatttatgttgggagagcccagaagaagggagaacgtcaggcagagttgaaaaagaag
ttcgagttgctgaagattgagcgcatgaacaggtaccagggagtaaatctttacatcaag
aacttggatgactctattgatgacgaacgtctgcgaaaggagttctctaactatggtacc
atcactagtgccaaggttatgactgaagatggtcgatccaaaggatttggctttgtttgt
ttctctacccctgaagaagcaactcgtgctgtcacagaaatgaatggccgtattctagta
agcaaacccttgtatgtagcacttgcccagcgccgtgaggaccgtaaggcccatctagct
tcacagtacatgcagcgtgttgctggcatgcgcatgcagcaaatgggacagatgttccaa
cctggtggcaccagctattttatgccaaccatgccacaagctcagcgcttctactcgcca
cagatggcacaaatcagagctactcctcgttggcctgctcagccaacagcccaagtgcgt
gcaggtgctcaagccactacgaccttccctatgcaagctgctccattcaggacagcaccc
cgtcaagctcagccaggtcctcgcaacgtcagacccatggcagctgcagctgcagcagct
cagcaacaacccattcccaacctgctacaagcaggtcgcccagtggcccccaacgcaggc
ggtgttcctcctgcagcaatttccaatgctgcccgtgcttccaactacaagtacacaaac
aacatgcgcaaccctcctgcagtttcaggtggtggcccagctgctgcagctgctgtggct
cctgtggctcagccagctgtccacatccagggtcaggagccactcactccatccatgctt
gcttctgccatgcctcaggagcagaaacaaatgcttggagaacgtctcttcccactcatt
cgggaaatctacccagagcttgcgggtaagatcactggaatgttgttggagattgacaac
tctgaccttttgcatatgcttgaggataggaactcgctcaaaaataaagtcgaagaggct
gttgctgtgcttcaggcccaccaggctaaacaacaagttgctgccgtcgtggctgctcag
aagaaggaagacgtttaa
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