Macrobrachium nipponense (oriental river prawn): 135218331
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Entry
135218331 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mnz03041
]
135218331
Enzymes [BR:
mnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135218331
Spliceosome [BR:
mnz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135218331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
R3H
Helicase_C
OB_NTP_bind
DEAD
HA2_N
AAA_19
AAA_22
Ank_2
ATPase
Ank_5
nSTAND3
Ank
AAA_7
T2SSE
AAA_29
FtsK_SpoIIIE
AAA_33
AAA_16
AAA_25
Ank_3
AAA_23
PhoH
NACHT
SRP54
Motif
Other DBs
NCBI-GeneID:
135218331
NCBI-ProteinID:
XP_064110630
LinkDB
All DBs
Position
9:complement(56433397..57223310)
Genome browser
AA seq
1624 aa
AA seq
DB search
MGRRRGPNTRFSEXKVSEELKITIALALKKLANDDQKELELPSSLTSEERKYIHFVSQQM
GFKSKSRGKGSFRYLTVYKKEGSTIMSSEAVVGLADATRSTILGLLQRCPVTNKERQDLL
PATERDRLMNPELRILSVLRSLGRLTPGPPQVLPPPSLSDLMAEARKLPIWNMXDQLLFW
QLIHHNQVILVCGETGSGKTTLVPQMLLQEASTLGKPCRIFCTQPRRISALTIAERVAAE
RGEKVGYTVGYQIRLESKLSPKTLLTFCTNGVLLRTLMGGDSSLASVTHILVDEVHERDR
FTDFLLIVLRDCLPKFRHLKLILMSAALDVNLYAKYFNNCPVIDVPGRCYPVKEYFLEDV
LKYTCYQTAEMARAYKELEQRQNGQKTAADWTQKMSQQFHNVTTSGTPVITPLSKASNSN
LSKYFSAGELDDTLKQEMDQCIQEAFLTGLDEVFSQMMYLIMSEKVSPDYQHSETWATPL
MVASGRGRVDIMEQLLALGASITLRAANDWTAANWAQSTDQKEALDLLHAYSACEGVDLL
SLSAEGMQSGVLAGNKGPSSSSGLATELSEEDKRMLDAYQHSVPDEYADVDLVHALCVKI
HKSQPPGAILIFLPGYDDIVTLRDRIIAEEKQYLEGGKYCLFCLHSSMQSSDQKKKKKKV
FRPAPPGVRKIILSTNIAETSVTINDVIYVIDSGKVKEMSYDSMVGVSCLKAVWISQASS
QQRRGRAGRCQPGICYHLFSRSRYNSLQQHQTPEILRTPLQELCLHTKLLAPANMPIADF
LARAPEPPAFMVIRNAVQLLKSMDALDGWEDVTELGHHLLDLPLPPRLAKMVITATVLKC
LDPVLTIAACLAHKDPFTLPKHPSEKRNANAIRKKFAAGTYSDHMVLLKAFQAWQKACGE
GWERGWCERNYVSGATMEMIHGMRSQVLAQLRGAGFVRARGPGDIRDVNTNSDNWAVVKA
ALVSGMYPNLIRVDREQCQLRTQKESKVRLHPTSSLLDTVGNSNGPISAAHRALVSALSS
DWLVFDEMVRIGIIAHVRTVTLVSPLTVLLLAGPMRLPLDALSEPSSRGSGDCSSDSESE
DRPAGLSCLVRIDNWIQFLGDPQAAHLALQLRHKLHALILRRLRAPNKPLTQGDEDVVRV
VAAALSQEEQALSLIQPSGIGQRPRPLYPHSHPHEGGLSGGTSEDSQSSRSSSRRTSDTA
TPTLAPTTPTICPPHSSATKFSANNNSAPKTVTVASSVTSGSGSLTTFNSGPVFSSSVSS
SSLSSSNNNSVFSSTSTNKSSTTTTASNTNTVTSSVCSSSITSSSTTNVNRSVSSSTIST
STSSNSSFKTPSSSAINIPLRTTAAVSSNGGGIVTSASSKIGIKDSKGNFNNKASNGSNN
SAEGGSNTTKSRYFIIKAAMYKQLEASYQTGLWAFTHNTERKILQATQNGLVMLVFTVHR
GGQFNGYAKFAGEKSDEKCPDITNVGPTLGSLYKIEWVKKWNVSFHQARRLYNPYNDNMQ
VHMCRDGQEVESSVGEQLIRLWDKGSGSGGSNGGSGYKGNNAYMVGGNGGPPMMHDPPGP
PPPRHPLHPPPHLGPVHSPFHHPFGRNYGNGYGYGGGNSSGGGGGGSGGGGGGYRGGYRG
GYRR
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgggccgtcgacggggtccaaacacacgcttcagtgagncaaaagtgagtgaagaattg
aagataacaattgcacttgctctcaagaaacttgcaaatgatgaccagaaagaattggag
ctgccttcatcccttacatcagaggaaaggaagtatatacattttgtatcccagcaaatg
ggcttcaaaagtaaaagtagagggaagggttcatttcgttacctgacagtgtacaaaaaa
gaaggatctacaattatgagtagtgaagcagttgttggacttgctgatgcaacccgctca
actattttgggcttacttcagcgttgcccagtcacaaataaagagagacaagatctgcta
cctgctacagaaagagatcgcctcatgaacccagaattgcgaatcttgagtgttttgagg
tctctaggtcgattgacaccaggtcctccacaagttcttcctcctccaagcttgagcgat
ttaatggcagaagcaagaaaactccccatttggaacatgncagatcaacttctgttctgg
cagctaattcatcacaatcaagttattttagtttgtggtgaaactggttccggaaagacc
acactcgtgcctcagatgttactacaagaagcatccactctggggaagccttgtcgtata
ttttgtacccaaccaagaagaatctcagcattgactatcgctgaaagagttgcagctgaa
aggggtgaaaaagttggttatactgttggttaccagatcaggctagaaagcaagttatct
ccaaagactttgttaactttctgcacaaacggcgtcctcttacggactcttatgggtggg
gattcgtctctggccagtgtaactcatattcttgtggatgaagtacatgaaagagacagg
tttacggatttcctacttattgttttacgtgactgcttacccaaattccgtcacctcaag
ctaattttaatgtctgcagcacttgatgtcaatctttatgccaagtatttcaacaattgc
cctgttattgatgttccaggccgttgttatccagtgaaggaatattttttagaagatgta
ctgaaatacacctgttaccagactgccgaaatggctcgtgcgtataaagaactagaacag
cgccagaatggacagaaaactgcagcagattggacacagaaaatgtctcagcagtttcat
aacgtaacaacatccgggacaccagtcataacacccctatcaaaggcttcaaattctaac
ctttcaaaatacttttctgctggagagctagatgatactttgaagcaagagatggaccag
tgtatccaagaagcattcttgactgggttagatgaggttttttcacaaatgatgtacctg
atcatgtcagaaaaagtgtcaccagattatcagcacagtgaaacatgggcaacaccactg
atggttgcctctggacgtggccgtgtggatatcatggaacagcttctggcacttggggca
tcaatcacattgcgggctgccaatgattggactgcagcaaattgggctcagtcaactgac
cagaaagaggctttagatcttctacatgcatatagtgcatgtgagggagtagacctactc
tctctgtcagctgaaggaatgcagtcaggtgttcttgctggtaacaaggggccatcatca
tcatctggcttagctacggaactttctgaggaagacaagagaatgcttgatgcataccag
cattcagtaccagatgagtatgcagatgttgatttggttcatgctctctgtgtgaaaatt
cataaatcacaaccaccaggagccatcctgatttttctcccaggatatgatgatattgtc
accctaagagatcgtatcatagctgaagagaagcagtatcttgaggggggaaaatattgc
ctcttttgtcttcactctagcatgcagtcaagtgaccaaaaaaaaaaaaaaaagaaagtg
tttcgtccagcacctccaggagttcgcaagatcattctttctacaaacattgctgaaact
agtgttaccatcaatgatgtcatttatgttattgactcgggaaaagtgaaagagatgagt
tatgattcaatggtgggggtgtcatgtctcaaagctgtttggatatctcaagcttcaagt
caacaacgtcgcggtcgagcaggaagatgtcagccaggaatttgttaccatctgttctca
cgcagtcgttataattcattgcagcaacaccagactccagaaattttaagaacacccttg
caggaattatgtcttcacaccaaactcttggctccagccaacatgccaattgctgacttt
ctggctagggccccagagccaccagcattcatggtcatacgtaatgcagtacaattatta
aagagtatggatgctttagatggatgggaagatgtaacagaattgggtcatcatttgctt
gatttgcctttgcctccccgcttagccaagatggtgataacagcaacagtgttgaaatgt
ctggatcctgtgcttactattgcagcatgccttgcccataaggatccattcacacttcca
aaacatcccagtgaaaaaaggaatgcaaatgcaattaggaagaagtttgctgctgggact
tacagtgatcatatggttcttctaaaagctttccaggcatggcagaaagcttgtggtgaa
ggttgggagcgtggctggtgtgaaagaaattatgtgtcaggtgccacaatggagatgatc
catggtatgcggtctcaggtattagcgcagttacgtggtgctggcttcgttcgtgctcgt
ggaccaggagacataagggatgtaaataccaacagtgataattgggctgtagtgaaggcg
gctttggtgtctggaatgtatccaaatcttatccgagtggaccgagaacagtgccaactt
cgaactcaaaaagaaagtaaggttcgtctacacccaacatcatctttgctggatactgtt
ggtaacagcaatggccccattagtgctgctcatagagcattagtcagcgcgctgtcttct
gactggctggtatttgatgagatggtacgaattggtatcattgctcatgtaagaacagtt
actctggtttccccactgactgtattgcttctagcaggtcctatgagactgccattggat
gctttgtctgaaccatcaagtaggggtagtggagattgcagtagcgatagtgagagtgaa
gatcgacctgctggcttgagttgtcttgtaagaatcgacaactggattcagtttttaggt
gatccacaagctgctcatttggcacttcagctaaggcataagctccatgcactgatcctt
agaagacttcgagctccaaacaagcctctaactcagggagatgaagatgttgtccgtgtt
gtagcagcagcactcagtcaagaggagcaagctttaagcctgatccagccctcaggtata
ggtcagcgtccacgcccactgtaccctcacagtcatcctcatgaaggtgggttgtcaggt
ggtacatctgaagactctcaatctagtcgatcttcttcaagacgaaccagtgatactgcc
acgccaactcttgccccaaccacacctaccatttgtcccccacactcttctgctacaaaa
ttttctgcaaataacaacagcgctccaaaaacagtcacagtagcaagttctgttacttca
ggtagtggtagcttgaccactttcaatagtggtccagtttttagcagcagtgtctccagt
agttcactgtctagctcaaataataattctgtattctcgtccacctctacaaataaatca
agtactactactacagcttctaatacaaacactgttacttcatctgtttgtagttcctcc
ataacatctagctccaccacaaatgtaaataggagtgtgagttcaagtacaattagcact
tctacatctagcaattcatcttttaagacaccatcatcttcagcaatcaatattccacta
agaacaacggcagcagtatcttccaatggaggagggattgtaaccagtgccagtagtaaa
ataggaataaaggacagcaaaggaaacttcaacaataaagcaagtaatggcagtaacaac
agtgctgaaggaggaagcaatacaacaaaatcaagatacttcattattaaagcagcaatg
tataagcaattagaagcttcttatcaaactggattatgggcctttactcacaatactgaa
agaaagatattgcaagccactcagaatggactggtgatgttggttttcactgttcataga
ggaggacagtttaatggctatgcaaaatttgcaggagaaaaatctgatgaaaagtgtcca
gatatcacaaatgttgggccaaccttaggatctctttacaaaattgagtgggtgaagaaa
tggaatgtgagtttccatcaagccaggcggctatacaatccttacaatgacaacatgcaa
gttcatatgtgcagagatggtcaggaggttgaaagctctgttggagaacagttaattcga
ctttgggataaaggcagtggcagtggtggtagtaatggtggaagtgggtataaaggcaac
aatgcatatatggttggaggcaatggaggtccaccaatgatgcatgaccccccaggaccg
ccacctccacggcatcccttgcatcccccacctcacctcgggccagtgcattctccattt
catcatccatttggcagaaattatggaaatgggtatgggtatggtggtggtaatagtagt
ggtggtggaggaggaggaagtggcggtggtggtggtggttatcgaggtggctatagaggt
ggatatagaaggtag
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integrated database retrieval system
