Macrobrachium nipponense (oriental river prawn): 135218670
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Entry
135218670 CDS
T09903
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135218670
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
135218670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
Complex1_30kDa
UBA_N4BP1_C
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Motif
Other DBs
NCBI-GeneID:
135218670
NCBI-ProteinID:
XP_064111187
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All DBs
Position
9:complement(64791703..65255223)
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AA seq
1276 aa
AA seq
DB search
MVYEECSVGEVERRVYPDLLCRGRGGSGVWWGVGRTSSAVATPPPSPPLPPPSPSCPINT
FVSFAPHLPSLPLNKMTIVSQQPPDVVCVAVGERGVVGSGCLLSAMSGVEAPPEAAPSPP
PSSPHPAHHTAHDDDLPVTTTTATSNTAVVSSSESLAQGLVRSRRKLENEDSSYDSDFEP
CEWTPASPRPEDDQHDDVCRTVSDTLGAEFAEYVTIKHGNPATTSSVITRTDTAPSSTSS
SSSHTTHLITSSSSSSNVAVATAAVITTTSSVDARIPSTTIAAPLTTSVNIATPTVLTTT
TVATVSTTQVSSSTSSKEAAQGSPDARATSPAVRLPSSSPPPTSSSSSSVGPPSVSVTPP
APVVATMPPAVTIIQTPTAASVPCSSSASSCSSSSCSSSQTPAVTITSDSASSPTSSSSS
STLALSSSEVSSGVSWVIHHSGYASQVEFGVKLGYSEALVQQALIKFGGIPDKDELLAEL
IRLGTSQGRSEGDDVAADDLVDIKEDSEQQQQSTLKPIIIDGSNVAMRHGNKTVFSCRGL
RICVDWFRARGHNEITVFVPAWRKEAPRWDTPITDQEILLDLEQENVLVFTPSRVCGGKR
IVSYDDRYILNEAVETGGVVVSNDNYRDLAAESPAFRKVVEESLLMYSWVNGRFVPPDDP
LGRNGPILDAFLRKTPKDRQAPCPYGRKCTYGNKCKYMHPERGTAPLKSVTERLQEQAQR
HYQKKANSRDSSPGDGLRLKSLSLPVGVADSDVAKKPLQRTQSNVPSVSLTLPSALTQET
PTHDMGPNTTTSSASHTRHLMAPQMESHPLDPLHSSTMFKSESSLYHLYPSQGHQASYGS
STWGWDGQNTIPNPQAGPSHSQPQSYGAHMPLTKNLSDPDSISSDNPHKKLQRQLTLNPT
YDSRLYKIVGFKEPAPELFPLAQQQQQQAVGQVSPSRSVKRDSENLMYPQVTGRVSPGYS
SQFGSREQLATGGLHPPLTRHSSSQESAKHMTSLPGHLYPPYSHPHVTRFASAPDPIWGG
HQQQPTTGPPPIARLSSTSDTRLNLYGCGTDAPFISESYDEQLARLPPFHSAPTHSPVPA
APSPGPIGSRPMSPQQGPVHLPAGVSSRPLKPSQQHLPSQQTPGFSNPITGAASHEDARL
RVYYHLSNLFPEAQVRAALAMYPEETDPYKICTSIFSINPGPVGSRPMSPQQPAQSTVSH
QAQNIPVRGSSPLTAGFSSPLSMPASSHEDARLRAFYHLSQLFPEAQVRAVLARFPDETD
AQTLCATLIGLSGNQS
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggtttacgaggagtgtagtgttggtgaggtagagaggagggtgtacccggatctcctt
tgcagaggaaggggagggagtggagtatggtggggagttggaaggactagcagcgctgtc
gcaacaccaccaccatcaccaccattacctccaccatcaccatcatgtcccatcaacacc
ttcgtttcgtttgctcctcacttgcccagtcttccacttaataaaatgacgattgtatca
cagcagcccccagatgtggtgtgcgtggcggtgggtgagcgcggggtagtgggcagtggg
tgccttctgagcgctatgtcaggggtggaggcgccaccagaggccgccccatcaccgccg
ccctcgtcaccacaccccgctcaccacaccgcccacgacgatgaccttcctgtcactact
accacagctaccagcaacaccgccgtcgtctccagcagcgagtcgttggcgcaagggctt
gtgcgctcgcgaaggaaactcgagaatgaagacagctcgtatgacagtgacttcgagccc
tgcgagtggacgccggcgtccccgagacccgaagatgatcagcacgatgacgtgtgtcgt
acagtgtccgacaccctgggtgctgagttcgcagaatatgtcaccatcaagcatggcaac
cccgccaccacatcatcagtcatcaccaggacagatacggctccatcttcaacgtcctcc
tcctcatcacacactactcatctcatcacatcttcaagcagcagtagtaacgtggccgtt
gccacggccgccgtcatcaccaccactagttcagtcgacgccagaatcccctcaacaact
attgccgcccccctcaccacttccgtcaacatcgcaacgccaactgtcctcaccacaacc
actgtcgccacagtttccacaactcaagtcagctcgagtacgagcagcaaagaagctgcc
caagggagtcccgatgcccgggccacatccccggcggtgaggttaccttcgtcgtcacca
cctccgacgtcgtcgtcgtcgtcctctgttggacctccgtctgtatctgtaaccccaccc
gcccctgtagttgcaaccatgcctcctgccgttaccataatccagacccctactgccgcg
tcagtgccctgcagcagtagtgcgagttcgtgtagtagtagtagttgtagcagtagtcaa
actccagcagtcacgatcacgagtgattccgcttcttcacccacatcatcgtcatcttca
tcaaccttagctttgtcatcgtcagaagtgtcctcgggagtttcttgggtcatccatcac
tcagggtacgcgtcccaagttgaattcggtgtgaagctaggctattccgaagccctcgtg
caacaggctctcatcaagttcggaggaatacccgacaaagacgaactgttggcggaactc
atcagactggggacgagccaagggcggtcggaaggagatgatgtcgctgctgatgattta
gtcgatattaaggaagattctgaacaacagcagcagtcgacgctcaaacctattattatt
gacggcagtaatgtggcgatgagacatgggaacaagactgtgttttcctgccgtggtcta
cggatctgtgtagactggttcagagcacgtggtcacaatgagataacagttttcgtacct
gcttggaggaaagaggcgccccgctgggacacacctattacagatcaagaaattctttta
gatctggaacaggagaatgtcctagtatttactccctccagagtatgtggtggaaaacgt
atagtgtcttacgatgatcgctatattttgaatgaggctgtagaaactggtggtgtagtt
gtaagtaatgataattatagagacctagcagctgaatccccagcttttcggaaggtcgta
gaagaaagcttactcatgtattcatgggttaacggacgatttgtgcctcctgatgatcct
ctaggccgaaatggaccaattttggatgcatttcttcggaaaacgcccaaagatcgccaa
gctccatgtccatacgggcgtaagtgtacctatggcaacaaatgtaaatatatgcatcct
gaacgtggaacagcgccattgaaatctgttactgaaagattacaagagcaggcacagaga
cattatcagaaaaaggccaacagtagagattcctcacctggagatggactacgtttgaaa
agcttgtctttgcctgttggtgtagcagatagcgatgttgcaaaaaagcctttgcagcga
acacagtcaaatgttccttcagtctcactcactttaccatcagctcttacgcaagaaact
cccacacatgatatgggtcctaataccacaacatcctcagcgtctcatactcgtcatctc
atggctccacagatggaatcccatcctcttgatcctcttcatagttcaacgatgttcaag
agtgaatcatctttatatcacctgtatccttcacaaggtcatcaggccagttatggttcc
tcaacttggggttgggatggccagaataccatacccaatcctcaagcaggtccatcccac
agtcaacctcaaagttatggcgcccatatgcctctcacaaagaacttgtctgatcctgac
tccatttcaagtgataatccacacaaaaagttacagcgtcagctgacattaaatccaaca
tatgattctcgtctttataaaattgttgggtttaaagaacctgctcccgaactgtttccc
ttagcacagcagcaacagcaacaagctgttggacaggtatctccaagtaggtcagtgaaa
cgtgatagtgaaaaccttatgtaccctcaagtgacaggtcgtgtgtcccccgggtattca
tcgcagtttggaagcagagagcagctagcaacaggaggacttcatccacctctaacaaga
cattcttcttctcaagaaagtgcaaaacatatgacatctttaccggggcatctctatcca
ccttactcacatccacatgtaaccagatttgcatcagctcctgatccaatatggggagga
caccagcagcagccaaccacaggacctccacccatagctcgattgagttcaacatcggat
acaagactcaatctttatggttgtggcacagatgctccatttatttctgagagttatgat
gaacaactagcgagattgcctccttttcattctgcccctacacacagtcctgtaccagct
gctccatcaccaggtcctattggatctcgaccaatgtctcctcagcaaggtcctgtacat
ctacctgctggtgtatcatcgcgaccacttaaaccttcacagcagcatctgccgtctcag
cagacaccaggtttctctaatcctattactggtgctgctagccatgaagatgcgcgttta
cgtgtttactaccatttgtcaaatcttttccccgaagcacaagtacgagctgcgctggct
atgtatcctgaagagactgatccttataaaatatgcacatcaatattctctattaaccct
ggtcctgttgggtctcgtccaatgtcaccccagcaacctgcacagtctactgttagtcat
caggctcaaaatattccagtacgtggttcctcccccctcactgctggtttttcaagtcct
ctttcaatgcctgcatcttcacacgaggatgcacgattacgtgcgttctatcacctgtca
cagctttttcctgaagcgcaagtgcgtgctgtattagccagatttccagatgaaacagat
gcacagactttgtgtgccactttgatagggcttagtggcaatcagtcctga
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