Macrobrachium nipponense (oriental river prawn): 135219138
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Entry
135219138 CDS
T09903
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135219138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135219138
Enzymes [BR:
mnz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
135219138
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135219138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
135219138
NCBI-ProteinID:
XP_064111694
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All DBs
Position
19:3945410..4022323
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AA seq
436 aa
AA seq
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MEVTKTNFKATLPNVIDAIDSSDFVAIDSEFTGLRTEHTNLNDLDTVEERYSKLKHSAQN
FGMIQFGLSAFRYVPTKKKYSHATYCFYVLAKPGAGEIYDTGSLNFLANNGFDFNKLYKE
GIPYISMKEEAELRHKLKENPVEISKPTPVKVTEIAAKTFLKETEKKVENFMDDAAQEEL
VIDGKTLTGFHRKIIYNNIAAKYENIRVQSVLTDNGVRNLVIKKFHSQTALKNQIEEERQ
NSLDAKIGFTHVIRKLLESNKPIVGHNLMLDLVHLFEKTVMPLPEKYETFKKMILANFPT
IYDTKLLAKDPPFSEDIPITGLEILFGDLCEKYNPPEFEIEAGHESFDISDSSKAHDAGY
DAFMTGVCFATMVKKLDGATWAKNSVVKSKRLAGYSNREVQMRERVINFTERIKDKYQKR
KTNVPCSGLCYALKRP
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacaaagacaaatttcaaggctaccttgccaaatgtgatagatgccattgac
agcagtgactttgttgctatcgacagtgaatttacgggactgagaactgagcacactaat
ttgaatgacctagacaccgttgaagagagatactccaagctaaagcattctgcccagaac
tttggaatgatccagttcggtttgtcagctttccgttatgtccctactaaaaagaagtac
agtcatgcaacatattgtttttatgtcttagctaaaccaggtgctggagaaatttatgac
actggaagtctcaactttcttgcaaataatggatttgattttaacaaactatataaagag
ggtattccttatatttctatgaaggaggaagcagaattgaggcataaactaaaggagaac
ccagtagaaatttcaaagccaacacctgttaaggtaacagaaattgctgccaaaactttt
ctaaaggaaactgagaagaaagtggaaaacttcatggacgatgctgcccaggaggagtta
gtgattgatggtaaaactctgactggctttcacaggaaaataatttacaataatattgca
gccaagtatgaaaacatacgagtacagtctgtgctgacggataatggcgtaaggaacttg
gttatcaagaagtttcattctcaaactgcactcaaaaaccagatagaagaagagagacaa
aacagtttggatgcaaagattggcttcactcacgtcatccgcaaattattggagagcaat
aaacctattgttggacacaatctgatgctggatttagtgcatttatttgagaaaactgtg
atgcccctccctgagaaatatgagacattcaagaaaatgatccttgcaaactttccaact
atatatgacacaaagttattagccaaagacccccctttcagtgaagacataccaattact
gggctggaaatattgtttggtgacctttgtgaaaagtacaatcctccagaatttgaaata
gaggcaggtcatgagagttttgacattagtgattccagtaaagcacatgatgctgggtat
gatgcttttatgactggagtatgctttgcaacaatggtgaagaaacttgacggtgcaact
tgggcaaagaattcggttgtaaaatctaaacgtctagctggatattcaaacagggaagtt
caaatgcgcgaacgtgttataaattttactgagcgaattaaggacaaatatcagaaacgt
aagactaatgttccctgctcaggattatgttatgctcttaagaggccgtga
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