Macrobrachium nipponense (oriental river prawn): 135220862
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Entry
135220862 CDS
T09903
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03022
Basal transcription factors
mnz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135220862
09124 Replication and repair
03420 Nucleotide excision repair
135220862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnz03021
]
135220862
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135220862
Transcription machinery [BR:
mnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
135220862
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
135220862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
135220862
NCBI-ProteinID:
XP_064114506
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All DBs
Position
2:102644696..102717924
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AA seq
397 aa
AA seq
DB search
MLQDEDEQDHKYRWAASGYEKTWEIVGEDESGRIEPSVTEMIQRARRRRLLEREASVRLG
IMRHVFVILDMSQAMSEQDFKPTRQICLLKILEDFIKEFHDQNPISQMGLITMQNKTAKP
CSSLSNNPQRHMEAIKKLLDSPCRGEPSIQNALDVALSSLRHLPRHTSREVLIIYAALTT
CDPGEIENTVKKVKEANVRVSVIGLTAELHVCKEISQETGGSMSVSMNDVHLKELINEHL
EPPAASVKMDHTLIKVGFPHQVNIDAKAALCMCHLDDLPALNTRGYYCPQCTAKYCDLPA
ECRVCGLMLVTAPHLARSYRHLFPLKHFIEEPSQNTSATNCYGCLKPFTDSSADKNVYIC
GTCKQVFCFNCDIFLHETLHSCPGCASNPSISQYHSS
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaagacgaagacgaacaagatcataaatatcgatgggctgccagtggatacgag
aaaacatgggaaattgtaggggaagacgagtctggccgaatcgagccatcggtaacagaa
atgatccagcgggcaagaagacgaagattattggagcgagaagccagtgtgagattagga
attatgcgtcatgtttttgttatattagacatgtctcaggcaatgagtgaacaagacttt
aaacctacaagacagatctgtttacttaagattctagaagatttcatcaaagaattccat
gatcaaaatccaataagtcagatgggcttgataacaatgcagaataaaacagccaagcca
tgcagtagtcttagtaataatccccaaagacacatggaggctatcaaaaaactattagat
tctccatgccgaggtgagccatcaatacagaatgcattagatgtagccttatcttctttg
cgccatcttccacgacatacttcgagagaggtgttgattatttatgcagctttaacaacc
tgtgaccctggagaaattgaaaatactgtaaagaaagtcaaggaggctaatgttcgagtg
tctgtcattggccttacagcagagctccatgtatgtaaagaaattagccaagagacagga
ggatcaatgtcagtttctatgaatgatgttcatctcaaagaactaattaatgaacacctg
gagcctcctgctgcgtccgtcaagatggatcacacacttatcaaagttggctttcctcat
caggttaacattgatgccaaagcagccctttgcatgtgtcatttagatgatcttccagcc
cttaacaccaggggttactattgccctcagtgcactgctaaatattgcgatctgccagct
gaatgcagagtttgtggtctcatgcttgtgactgctccacatcttgcacggtcatataga
cacttgtttcctctgaagcatttcatagaggaaccatcacaaaacacttctgcaacaaat
tgctatggttgtctgaagccattcacagacagttctgcagacaaaaatgtatatatttgt
gggacctgcaagcaagtattttgcttcaactgtgacatcttcctccatgagactttgcac
agctgtccaggctgtgcttccaatccgtcaatttcacagtaccattcgtcttga
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