Macrobrachium nipponense (oriental river prawn): 135221651
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Entry
135221651 CDS
T09903
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03013
Nucleocytoplasmic transport
mnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135221651
03015 mRNA surveillance pathway
135221651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135221651
Enzymes [BR:
mnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135221651
5.6.2.5 RNA 5'-3' helicase
135221651
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135221651
mRNA cycle factors
Common to processing body (P body) and stress granule
135221651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
AAA_16
NPHP3_N
AAA_22
ATPase
nSTAND3
SRP54
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
135221651
NCBI-ProteinID:
XP_064115412
LinkDB
All DBs
Position
3:20060110..20163356
Genome browser
AA seq
1129 aa
AA seq
DB search
MSVDAYGPSSSQSLTFYDTEEATTDLLGADTQGSEYEFNLTLGSQTQTQGGGGGGDHLDK
TQASQSQVTVNGDAVEAEVEKATEALGDLQFEEEDEETAFYAKELPDWACRYCGIHDPAS
VVMCNVCHKWFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFV
LGFIPAKAESVVVLLCRQPCAAQSSLRDMNWDPEQWKPLISDRALLPWLVRVPSEAEQLR
ARQITAQQINKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLE
ADYDKKLKESQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKP
WSGVGHVIKIPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVD
DSSVSPYIYHRLLGHVEVDELIFRHIHLPKQLSAPNLPTLNNSQQYALKHALQRPLSLIQ
GPPGTGKTVTSATIVYQLVKQTGGTVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREA
IDSPVSFLALHNQIRNLEDNGELQKLQQLKEETGELSSADEKRFRMLKKQAEKTLLEAAD
VICCTCVGAGDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVM
CKKASRAGLSQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVVDADRT
MKGVSFPWPQLDKPQFFYVTSGQEEIAGSGTSYLNRTEAASVEKLVTRFLNCGVKPEQIG
VITPYEGQRAYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDLIIMSCVRSNEHQGIG
FLSDPRRLNVALTRARYGIIIVGNPKVLSKQQGLWNHLLHHFKEKKVLVEGPLNNLKESM
MQFSKPKRLINATNPGSHFMNTAMYDAREAMVPGSMYDRSSHINGTMPPPSQCFRGPQYD
MYGRAHDAMDYISADHSQPGLSNLPVPVGMFMNMAHVPPRFYQQHQQALAQARGGRGGGR
GGRMGNRKPNKNTGGAGALQLSQPFSQDPTTQSYSQPGLTQGHLSQGMPGPGLSGLSQGL
SQAELSQDSYMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcctacggccccagcagctcccagagcctgactttttacgacacggag
gaagccaccaccgacctcctcggggctgacactcagggctccgagtacgagttcaacctc
accctcgggagtcagacccagacccaggggggaggagggggaggcgaccacctggacaag
acgcaggcttcgcagagccaggtcacagtgaatggagatgctgttgaagctgaggtagaa
aaagccactgaagctcttggtgatttgcaatttgaagaagaggatgaggagactgctttt
tatgctaaggaattaccggactgggcttgtcgctattgtggcattcatgatccagcttct
gttgttatgtgcaatgtttgccataaatggttctgtaatggaagggggaatacatctggt
tcccacatcataaaccatcttgtccgagcaaagcataaggaggttagtcttcacaaggat
ggactggttagagacactgttttagagtgctatgcttgtgctgtgaaaaatgtttttgtg
ctgggctttatacctgctaaagctgaatctgtggtggtcctcttatgtcgccaaccatgt
gctgcacagagttctctgcgtgatatgaactgggatccagagcagtggaaacctctgatt
agtgatcgtgctctgctgccttggcttgttcgtgtaccttcagaagcagaacaacttcgg
gctagacaaattacagcccagcagatcaacaagttggaagagttgtggaaagagaatgct
tcagcaacttttgatgatctggagcgaccaggtgtagatgaagaaccccagcaagtttgc
cttagatatgaagatggtttccagtatcagaatatttttggacctctagtaaaattagaa
gcagattatgacaagaaattgaaggaatcacaaacacaagataaaattgaagtgcgttgg
gacattggcttgaacaagaaaatttgtgcctattttactcttgctaaaacagatggagat
atgcgcctgatgcatggagatgagctgcgtctccgttatctaggggacctccataaacct
tggtctggggtagggcatgtgatcaagatccctgataattttggggaggaggttgggatt
gaattgaaatctaatgttggtgtgccaactgattgccgggataagtttgttgtggacttt
gtttggaaatcaacaagttttgataggatgcaggctgcattgaggaagtttgctgttgat
gattcttcagtctctccttacatctaccatcggctattgggccatgtcgaggttgacgag
ttgatctttcgtcatattcaccttccaaagcagttgtcagctcctaaccttcctacactg
aataattctcagcaatatgccctgaagcatgccttacaacgtcccctgtctttgatccaa
ggtccaccaggaactggcaagactgtgacatcagcaactattgtgtatcagctggtcaaa
cagactggtggcacagttcttgtatgcgctccatccaacactgccgttgaccagctcaca
gagaaaatacacaaaactggactcaaggttgtgcgtttgtgtgccaaatcccgtgaagcc
attgactcgccagtatcatttttggccttgcataatcagatacgcaacctggaggataat
ggagagctacagaaacttcagcaattaaaagaggaaactggagagttatcatctgctgat
gaaaaaaggttccggatgctgaagaagcaggcagaaaagacattgttggaggcagcagac
gtgatctgctgcacatgtgttggtgctggtgatcctcgtcttgctcgtttgaaattccac
tccatcctaatagatgagtctatgcaggccacagaacctgaatgcatggtccctgttgtt
ctaggggccaagcaggtcattttggtgggtgatcattgccagttgggaccagttgttatg
tgcaaaaaagcatctcgagcagggctttctcaatctctttttgaacgtttggttgtattg
ggtatccggccattccgtctcaccgtccagtatcgcatgcatccccaactcgcacaattc
ccatcaaatttcttctatgaaggatctctacaaaatggagtagtagatgctgatcgtacc
atgaaaggagtaagcttcccatggcctcaattagacaaaccccagttcttctatgtcacc
tctggccaagaagaaatagcaggttcaggcacatcatacttgaaccgaactgaagccgca
agtgtagagaagttggttacccggtttctcaattgtggtgtgaagcctgagcagattggt
gttatcacaccttatgaagggcagagagcatatttggtacagtatatgcagtatcaagga
ccacttaaccagaaattatatcaacgcctggaagttgccagtgtggatgccttccaaggc
cgtgagaaggatttgattattatgtcttgtgtgcgttccaatgaacaccagggaattggt
tttctctcagatcctcgacgtttgaatgttgctcttacacgcgctcgatatggtattatc
attgttggaaacccaaaagtactatctaagcagcaaggattgtggaatcatttactacat
catttcaaggagaagaaggttttggttgaagggcctctcaacaatctcaaagagtcgatg
atgcaattcagcaagcctaagagactgatcaatgcaactaatccaggatcacacttcatg
aatacagcaatgtatgatgcacgagaagccatggtgccaggatctatgtatgatcgttca
agtcacatcaatggaactatgcccccaccatctcagtgtttcagaggacctcaatatgac
atgtatggacgggcacatgatgcaatggactacatctcggctgatcattctcaaccagga
ctgagtaatttgccagtgcctgttggaatgtttatgaacatggcacacgtgccaccccgt
ttctaccaacaacaccagcaggctttggcacaggcaagaggtggacgaggaggtggtcgt
ggaggtagaatgggcaataggaaacctaataagaatactggtggagcaggtgctcttcag
ttgtcacagccgttcagtcaagatcctaccacacaaagttattcccagcctggcttaaca
caaggacatttgtcacagggaatgcctgggcctggattaagtggactttcacaaggactt
tctcaagcagaattatctcaggattcatatatggttgatcagttccaaagtcaaaccgat
ggcctcctctcccaggactccacataccagggtgaccgtgcgtttttcactccagcatca
cagacgcaccacttttcacagccgtactga
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