Macrobrachium nipponense (oriental river prawn): 135224637
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Entry
135224637 CDS
T09903
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135224637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135224637
Enzymes [BR:
mnz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
135224637
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135224637
mRNA degradation factors
3'-5' decay
Pan complex
135224637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
zf-CCCH_2
Beta-prop_EML_2
DNA_pol_A_exo1
zf-CCCH_tandem
Motif
Other DBs
NCBI-GeneID:
135224637
NCBI-ProteinID:
XP_064119916
LinkDB
All DBs
Position
12:85961943..86055132
Genome browser
AA seq
1270 aa
AA seq
DB search
MDFSGVPFGDEILGFSGTNAFNEENAAYTEMFGTEGGEAFQGGDEFAHATPEDFANGGDY
QESRTVLIDGGDRFGVSTLAVDTREELVWVGNNGGHVTSYYSSELMKYTSFQVHDTEEIR
DILSIEPGILVLTPTSLHLRTRQGMHTLVHTSPQLENMQCMLQLADNFNHRLLMGGHQST
LIEYDLMRFEETVLHDVGENGCAILRDHPRFVCCGDVSGRISLKDPRTMRQEHSFQAHSG
ILSDFDVLGNYIATCGFSNRMCQVVPDQFVMVFDLRMMKFSLPLRAVAPPTFLRFMPGLS
SCLAVIGPQGQWQLMDAGRPDSAIIGHYHANIAPTGDITSLDVSTSSQAIVMGDNCGSLH
LFTSCTKPVFNNFSQETTLPDVPEQTQTMPLTDVTSSLSSVPIFYPSSPMLSDWPEQYMK
VRYRSTPPVDAEVLQTMKLVGPIGYAPNLHNKKRNQVEYKFSRNKGPKSSQNENVIVKTE
DGITVHVPWRYRKMEIKYSKLGIDDFDYDQYNRTCFSGLDNSLPNSYCNPMIQMFYYISP
LRALVMSHLCEREFCLVCELGFLFHMLDVSMGQGTPCHASNFLRAFRTIPEASAMSLTLS
DQDSRAKINFATKIQSWNRFVLQQLHTETLVEKMTDDSHLYSLADGQSIQHQAQVATVDE
NQVEGEKTDEEKKIEHQDKQEFSPVADIFGSHAISINRCTRCCHEIHKDTTSLLVNLSYP
EVNGDSPPGFIPFSSIVERSMGLEQTRQAWCDSCTRYQPIEQWRRYRTLPNILATNCGLD
SAQDIKFWRNQFEILLTEVKEKQKEEKKNAEVKKDSEDKENKNDRSAAVTGSPSTPSKRN
AYPESPAQHTPNARPCRYGTSCTRSDCRFGHPGRDTADGQQPAHILSLLDQTMEHSWVPF
GMRAKLNENGTVNLKDIPKAKLEELVDNEDGVVYELVGVVSHIGDPRFPDKNNLVACIKV
GPTYHVRAKVSSVSHWYLFNDVSIQPIAAEEAVWFPCGWKVPCVLYWQRRHIPSALEKIE
PGNPITSDVFGEDKSLAQRGRKRITFTPLTADEMPGEGDLVAMDAEFVNLHQEEAEIRSD
GTRTTIKPSQKSVARITCIRGQGPLEGTPFLDDYISTQEQVVDYLTQFSGIKPGDLDANF
SQKHLTTLKSTYIKLRYLVDKGVKFVGHGLKNDFRVINMTVPANQLIDTVLLFHMSHNRM
VSLKFLAWHFLKIKIQSVTHDSIEDARTALALYQKYCELKASGDLVMELQNLYEAGKKAQ
WKVPGEEEDE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcaggtgtccctttcggagatgaaatattaggttttagtggaacaaatgct
ttcaatgaagaaaatgcagcctacacagaaatgtttggaacagaaggaggagaggcattt
cagggaggagatgaattcgcacatgccactcctgaagattttgctaatggtggggattac
caagaaagtaggacagttttgattgatggtggcgatcgttttggtgtttcaacacttgct
gttgatactcgtgaagaattagtttgggttggtaacaatgggggccatgtgacttcgtat
tacagctcagaactaatgaagtatacttcgtttcaagtacatgatacagaggagataaga
gatattctgtcaatagagccaggtattcttgttcttactcccacatcgcttcatctacga
acaagacaaggaatgcacaccctagttcatacatctcctcagttagagaacatgcagtgc
atgttgcagttggcagataactttaatcataggcttttaatgggagggcaccaaagtacc
ttaattgaatatgacttgatgcgttttgaagagactgttttgcatgatgtaggtgaaaat
ggatgtgccattcttcgtgatcatccaaggtttgtgtgttgtggtgatgtttctgggaga
atcagcttgaaagatccgaggaccatgcgacaggagcattcctttcaagcacatagtggc
attctttcagattttgatgttttaggaaattatatcgcaacctgtgggttctcaaacaga
atgtgtcaggtcgtcccagatcagtttgttatggtgtttgatcttagaatgatgaagttt
tctcttcccttgagagctgtggccccaccaacatttttacgatttatgcctgggttatcc
tcatgtcttgctgttattggaccacagggccagtggcagctaatggatgctggacgacca
gacagtgctataattggccattaccatgcaaacattgctccaacaggtgatataacttcc
cttgatgtatcaacttcatcacaagcaattgtcatgggggacaactgtggatcattgcat
ctttttacatcttgtaccaagccagtcttcaacaatttttcacaggagaccacactacct
gatgtcccagagcagactcaaacaatgccattaacagatgtgacgagctctttgtcatct
gttcccattttttatccaagtagcccaatgttgtctgattggcctgagcaatatatgaag
gtgcgatacaggtcaacaccccccgtggatgctgaagtccttcaaactatgaaacttgtt
ggaccaattggttatgcacctaatttacataataagaagaggaatcaagtggaatataaa
ttcagtcgaaacaagggaccaaagtccagtcagaatgaaaatgtgattgttaaaacagaa
gatggaattacagtgcatgttccttggcgatatcgtaaaatggagataaaatacagcaag
cttggcatagatgattttgactacgaccagtataacagaacttgtttctcagggttggat
aattcactgccaaattcttactgcaacccaatgatacagatgttttactacatttcacct
ttgcgagctcttgtgatgtcacacttgtgtgaacgagagttttgtctagtttgtgaattg
ggtttcctatttcacatgctggatgttagtatggggcaaggcacaccttgccatgcctca
aacttcctcagagcatttagaaccattcctgaagcatctgcaatgagcctgacgttgtca
gatcaagatagtcgagcaaaaattaattttgcaacaaaaattcagagctggaatagattc
gtgttgcagcagcttcatactgagactttagtggaaaaaatgacagatgatagtcatttg
tattccttggctgatgggcaaagcattcagcatcaagcacaagtggctactgttgatgaa
aatcaagtggaaggagaaaaaacagatgaagagaaaaaaattgaacatcaagacaagcaa
gagttttctccagttgcagacatttttgggtcacatgcaataagcataaatcgttgcaca
cgttgttgtcatgaaattcataaagatactacatctcttcttgttaacctctcatatcca
gaagtaaatggagattccccacctggcttcattccgttttcaagcatagtagaaagaagc
atgggcttggaacaaactaggcaagcatggtgtgattcatgcacaagataccaacccatt
gagcagtggagacgttacaggactttaccaaatattctggctacgaattgtggcctagat
agtgcccaggatattaaattttggcggaatcagtttgaaatattgttgactgaggtgaaa
gagaagcagaaagaggagaaaaagaatgctgaagttaaaaaagatagtgaagacaaagaa
aataaaaatgaccgttcagcagctgttacaggaagtccatcaacaccttcaaaaagaaat
gcatatcctgagagtcctgcgcagcacacacctaatgcacgcccttgtagatatggtact
tcatgcactcgttctgattgccgttttggacatccaggacgggatactgcagatggtcag
cagcctgctcacatattaagcttactggatcaaacaatggagcattcttgggttccattt
ggcatgagggcaaagcttaatgaaaatggaacagtaaatcttaaagatataccaaaagct
aagcttgaagaattggttgataatgaagatggagttgtctatgaacttgtaggggtagtt
tctcacattggagatcctcgctttccagacaaaaataacttggtggcatgtatcaaagtg
ggccctacatatcatgtacgagccaaagtgtcatctgtgtcacattggtatttatttaat
gacgtcagtattcagccaattgctgctgaggaagcagtgtggttcccatgtggttggaaa
gtaccttgtgtcctgtattggcaacgacgtcatattccttcagcgctcgaaaaaatagaa
ccaggtaatccaataactagtgatgtttttggagaagataagtcactggcgcaaagagga
agaaaacgaatcacttttacacctctcacagcagatgaaatgccaggcgaaggtgacttg
gttgcaatggatgcagagtttgttaatttacatcaggaagaagcagaaattcgtagcgac
ggcacaagaacaactataaagccatctcagaagtctgtcgccagaataacttgcattaga
ggacaaggaccattagaaggcacaccattcttagatgactatatatcaacccaggagcag
gttgttgattaccttactcagttttctggcattaaacctggggatctggatgccaatttt
tcacagaaacacctcacaacgctcaaatcaacgtacataaagctgcggtacttagttgac
aaaggtgtgaaatttgttggacatggattgaaaaatgatttccgagttatcaacatgact
gtgccagcaaatcagctaatagacactgttctcctgttccacatgtcacacaaccggatg
gtgtcactcaagtttcttgcatggcattttcttaaaataaaaatccaaagtgttacacat
gacagcattgaagatgctaggacagcacttgcactgtatcagaaatattgtgaattaaaa
gccagtggtgatcttgtcatggagctacaaaatctctacgaagctgggaaaaaggcacag
tggaaagtacctggagaagaagaagatgaataa
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