Macrobrachium nipponense (oriental river prawn): 135224700
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Entry
135224700 CDS
T09903
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz04382
Cornified envelope formation
mnz04512
ECM-receptor interaction
mnz04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135224700
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135224700
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135224700
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mnz04147
]
135224700
00536 Glycosaminoglycan binding proteins [BR:
mnz00536
]
135224700
Exosome [BR:
mnz04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135224700
Glycosaminoglycan binding proteins [BR:
mnz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135224700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135224700
NCBI-ProteinID:
XP_064120040
LinkDB
All DBs
Position
12:100114150..100186625
Genome browser
AA seq
1736 aa
AA seq
DB search
MEDQRTSSKRILSVLLTLFWCHASLANKACLNCYTCICEGQKGLLGAPGIPGLQGSAGIP
GDPGFEGPAGPVGRIGDFGEPGAMGEKGYRGEMGMPGFQGTSGIPGLPGLEGPAGETGPP
GCNGTDGRSGLPGLPGPPGLRGPPGPEGTRGPVGDTGEGGTNSRGVKGDQGEPGYPGGPG
YGGTSGPQGTRGDQGIPGLKGLRGDKGFPGPAGERGDTPPPVPPVTVRGEKGQKGEPSGI
KFKKPPSEFDLMGGKGDSGFPGPAGISGSTGGPGYIGKLGEKGIKGEIGRDGQKGKPGRQ
GQRGPPGEKGFKGAPGFAGYPGPKGPKGYEGVPGFDGQPGLVGEPGPEGMSDLADTVQYI
GPPGPQGPPGLPGFPGPDGLNGRPGGLGLRGPPGSPGPAGSDGQNGDRGRSQPGEDGDAG
FDGLIGKPGRRGTRGPAGFPGIKGIPGDSVFGSKGLDGRNGRPGSNGIPGARGFSGPKGP
KGLPGEGVPTRGPKGPKGLRGPPGEPGLMGPNGRNGIPGSKGTEGDTCIPSPRDPCESGD
LGIPGPQGIQGRSGPPGLPGPRGPKGVPGNPGLPGLRGIDGFRGTSGANGRAGRKGDVGD
LVPSESSRGRYGSDGELGIPGLAGLKGERGPDGAMGRIGPEGIKGDQGNDGIPGNPGRPG
LDGLRGEDGIPIHGLPGSRGTKGEQGEPGIRGPPGPLIFPGGANLTEFIKGKRGPQGLIG
EVGEKGTPGDPGYRGDPGAPGPPGFSEQGPRGLKGYPGPKGEMGHAGQKGFNGDDGTPGL
DGIPGLKGEDGEDGISGITGPNGEPGSLGSKGEPGIDGKQGSKGYLGLPGLPGLKGAKGA
PGNLGIPGQKGIQGVLGDRLPGQPGVAGRPGAPGFPGPLGSPGGQGRPGIPGPSGAPGTK
GNIGFVGALGEPGNPGLDGIPGSPGRPGSAGFPGRPGLKGGSGVPGNPGNPGNPGAFGRP
GPPGLVGDPGLNGNIGFEGNPGPKGPRGFPGEVGFRGPPGENGTHFGHGDFGFPGQPGDP
GRNGFPGTLGQLGIPGIDGRGIPGPKGRIGPIGFRGPNGLQGRQGAKGESGLMGIPGTRG
ESGEPGTVGLPGPHGGTVVGPPGAEGLPGIKGTPGEPGRFGNRGLPGDVGAPGLSGKLGP
PGLRGPDGDRGPQGISFGATKGEPGLPGLTGDRGANGLPGIQGIKGEIGNQGLPGFVGRP
GLPGQRGDPGSRGSIGPPGLPSRKGEPGEKGMEGRPGKIGLPGRHGQKGQPGDFGPDGPA
GSKGLPGLTSPGLNGDPGDSGFPGPPGRNGIPGLAGRRGPVGDPGFRSGFPGEPGFPGLP
GLKGLPGEPGPRGFTQAPGDRGLKGSQGEPGFIGLQGLAGDIGDAGDPGRPGIPGAFGLK
GTPGQPGRIGSPGFPGPPGLRGDVGNPGGLGPSGFMGKPGRDGLKGRKGAIGDAGRPGPT
GQPGPRGIRGDRGFEGRSGTPGKPGLDGSSGDPAPPGPPPKSRGYMVTRHSQESFTPSCP
AGTNVMWEGYSLLHVMGNHRAHGQDLGAPGSCLRRFSTMPYLFCNLNNVCDYSQRNDYSY
WLSTTEPMPMMMTPITGPEIEKYISKCVVCEAPSMVIAVHSQTLDIPDCPQGWESLWIGY
SFIMHTDSGAEGSGQSLISPGSCLEDFRSSPFIECTGHGRCNLFPSAFSYWLATIEIEQQ
FRKPRQQTLKAGDLKSRISRCNTCMRKRGGSTIPTPPPEYQQPPRREDDSYFFIGK
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccaaaggacgtcttccaaacgaattttatcggtccttttaacgttattttgg
tgccatgcgtcattagcgaataaggcttgtctgaactgctatacatgcatttgcgaaggc
cagaagggactcttgggagcccctggtatccctggtctccagggctcagccggcattcca
ggagaccccggatttgaaggtcctgcaggccccgtcggcagaattggcgacttcggggag
cccggagcgatgggagagaaaggttatcgaggcgaaatgggcatgccagggttccagggc
acgagtggcatcccgggtcttccaggattggaaggtccagcgggcgagacggggccacct
ggttgcaacggcacagacggtcgttcgggtttgcctggtcttcctggacctccaggtctc
aggggtcctccaggccccgaaggtaccagaggacctgtaggagacacgggcgaaggaggc
acaaattcccgaggcgtcaagggtgaccaaggagagccgggctatcccggaggacccgga
tacgggggtacctctggaccccagggtactagaggtgatcaaggaataccaggtcttaag
ggacttcgaggtgacaaaggtttcccaggacccgcgggagaaagaggcgacactcctcca
ccagtccctcctgttactgtcagaggagagaaagggcagaagggagaaccctctggcata
aagttcaagaaacctccatctgaatttgacctgatgggaggtaaaggggattcaggtttt
cctggtcctgctggcatatccggaagcactggaggaccaggttacattggcaagcttgga
gaaaagggtatcaaaggagaaataggtagagacggtcaaaagggaaagccgggacgtcaa
gggcaacgaggaccccctggtgaaaaaggcttcaagggagcacctggatttgctggatat
cctggccccaagggtcctaagggttatgaaggcgtacctggttttgatggtcaacctggt
ctagtaggagaaccaggtcctgaaggaatgagtgatcttgccgacactgtccagtatata
ggacctcctggaccacaaggtcctcctggattgccaggttttcctggtcctgatggttta
aatggtcgacctggaggcttagggctacgtggtcctccaggctctccagggccagctgga
tctgatggccaaaatggtgatcgtgggcgctcgcagcctggtgaagatggtgatgctggt
tttgatggactaatagggaagccaggaaggcgtggcacaaggggtccagcaggattccca
ggtattaaaggcatccctggcgattctgtgtttggaagcaaaggattagatggacgtaat
ggaagaccgggcagcaatggtattcctggagccagaggattttctggtcctaaaggcccg
aaaggtttacctggtgagggagttcctactcggggcccaaaaggaccaaaaggtcttcgt
gggccaccaggagagccaggattaatgggccccaatggccgcaatggtatccccggaagc
aaagggacagaaggagatacctgcattccttctccaagagatccatgtgaaagtggtgat
cttggaattcccgggcctcagggtattcaaggccgttcaggtcctccaggtcttcctggt
ccccgaggtccaaaaggagtcccaggaaatccaggtctccctggtttgcgaggcattgat
ggatttagaggaacttctggtgctaatggaagggctggcaggaaaggtgatgttggggat
cttgtaccaagtgaaagtagcagaggtcgatacggaagtgatggtgaactaggaatacca
ggtcttgctggtctaaaaggagaaagagggccggatggtgcaatggggagaattggacca
gaaggtattaagggtgatcaaggaaatgatggaattcctgggaatcctggtaggcctgga
ttggatggattgcgaggagaggatggtatcccaatacacggcctccctggctcaagagga
actaaaggagagcaaggagaacctggaattcgtggtccacctggtcctcttatatttcct
ggtggcgcaaacttgacagagttcatcaaaggcaagcgaggaccccagggtttaataggt
gaagtaggtgaaaagggtactccaggtgacccaggttaccgtggggatcctggtgctcct
gggcccccagggtttagtgaacaggggccaagaggtttaaaaggataccctggaccaaag
ggagaaatgggccatgctgggcagaaagggttcaatggcgacgatggaactccaggattg
gatggtataccaggcttgaaaggtgaagatggagaggatgggattagtggaatcacaggc
cctaatggagaacctggcagtcttggtagtaagggtgagccaggaatagacggtaaacaa
ggctcgaaaggctatcttggtttacctggtcttccaggtttgaaaggtgccaagggggct
cctgggaatctgggcatcccaggtcaaaagggcattcaaggtgtacttggtgatagactt
cctggacagcctggtgttgctggacgtccaggtgctcctggttttcctggtcctcttggt
agtcctggtggccaagggcgtcctggtataccaggtccgagtggagctcctggaactaag
ggaaacatagggtttgtaggagcacttggtgaaccaggtaatccaggtttagatggtata
ccaggctctccgggaaggccaggcagtgctggattcccaggtcgccccggcttaaaagga
ggaagtggagtcccaggtaaccctggaaatcctggtaaccctggtgcatttggacgccct
ggaccacctggccttgtaggagacccgggtcttaatggaaatattggttttgaaggcaac
ccaggaccaaaaggccctcgtggttttccaggtgaagtaggttttaggggaccacctgga
gaaaacggaactcattttggtcacggtgattttggttttccaggtcagcctggtgaccct
ggtagaaacgggtttccaggtactctgggacaacttggaatacctggaatagatggacga
ggaattccaggacccaagggtcgaattggccccattggttttcgtggcccaaatggactt
caaggaaggcaaggtgcaaagggagaatcaggcctgatgggcataccaggaacaagggga
gaatctggtgaacctggaactgttggattacctggaccacatggtggaacagttgttggt
ccccctggtgctgaaggtttaccaggaatcaaaggaacgcctggagaacctggcagattt
ggtaaccgtggcttacctggagatgttggagcacctggtctttctggtaaacttggtccc
cctggattacgaggtccagatggtgaccgaggtccccaaggcataagctttggtgctaca
aaaggagaacctggtttacctggtttaactggagacagaggggccaatgggcttccaggt
attcaaggaattaagggggaaattggaaaccaaggacttccaggtttcgtcggccgtcca
gggcttcctggacaaaggggtgatcctggaagtaggggatcaattggtcctcctgggtta
ccaagcagaaaaggagagcctggtgaaaagggaatggaaggtcgtcctggaaaaattggt
ctaccaggccgccatggccagaagggtcagcctggtgactttggacctgatggtccagct
ggcagtaagggtctgccaggattaacctctccaggattgaatggtgatcctggggattct
ggattccctggtcctcctggaagaaatggtatccctggtttggcaggacgacgaggacca
gtaggtgatccaggatttagaagtgggttcccaggtgagcctgggtttcctggtctacct
ggtttgaaaggacttcctggtgaaccagggccacgtggttttacccaagcccctggtgat
agaggtttgaaaggatctcagggtgaaccaggatttattggacttcaaggacttgcaggt
gatattggggatgctggagatccaggtcgacctggtattccaggggctttcggattgaag
ggtacccctggacaacccggtagaataggaagtccaggcttccctggccctccaggtcta
cgaggtgatgttggtaaccctggtggtcttggaccttctggttttatgggtaagcctggg
cgtgatggattgaagggaagaaaaggtgctattggtgatgcaggtagaccaggtcctact
gggcagccaggacccagaggtattagaggtgatcgtggctttgaaggtcgaagtggtact
cctggaaaaccaggactggatggctcatctggtgacccagctccgcctggtccaccacca
aaatcaaggggttacatggtcactcgccattctcaagaatcattcacaccatcttgtcca
gctggtacaaatgttatgtgggaaggttactcccttttacatgtgatgggtaatcacaga
gcccatggtcaggatcttggggctcctggcagttgcctcaggagattcagcactatgcca
tacctcttctgtaacttgaataacgtgtgtgattactcacaaagaaatgattattcctac
tggctctcaacaacagaacccatgccaatgatgatgacaccaattacaggaccagaaatt
gaaaaatatatatcaaagtgcgttgtatgcgaagctccgtcaatggttattgcagttcac
agtcaaacactagatattcctgactgtccacaaggctgggagtcactctggattggatat
tcatttatcatgcatactgactcaggagctgaaggatcaggacagtcattaatctcacca
ggatcttgtctggaagatttcaggtccagtccattcattgagtgcactggtcatggtcga
tgtaatttattcccctctgcattctcctactggcttgccactattgaaattgagcaacag
ttcagaaagccaagacagcaaacacttaaagctggggacctaaagagtagaattagtcgt
tgtaacacctgcatgagaaagagaggtggtagtacaatacctactccaccacccgagtat
caacagcctccacgcagagaggatgattcatacttcttcattggaaaataa
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