Macrobrachium nipponense (oriental river prawn): 135224701
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Entry
135224701 CDS
T09903
Name
(RefSeq) collagen alpha-2(IV) chain-like
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135224701
NCBI-ProteinID:
XP_064120041
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All DBs
Position
12:<99846873..>99875834
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AA seq
1607 aa
AA seq
DB search
MGLNGFPGINGIPGIPGPPGPTGRPGLDGCNGTDGAPGSPGLPGPPGPRGFRGGEGVKGQ
KGEPAIGPFPAGKGEKGEPGRDGRQGPQGPPGPPGRRGEDGLPGQPGAKGDRGYDGEKGE
KGPMGLVFEGQKGEPGEKGEKGDPQNCDGAAQGGDTNCTTIVIPGKKGDRGVPGPQGPKG
NKGDKGAQGRPGDSGPKGEKGLPGYVGAPGREGVPGPPGPTGSKGDRGPDGLDGLPGLRG
EPGLSGRDGRDGSKGDRGPPGPSKGGPPGPVGPPGLRGFPGPKGKDGLDGIPGGRGPPGV
PGGPGQPGNPGREGPPGLKGDKGVSGLPGLPGSEGPPGLPGERGLSGVPGPKGDKGYAIP
GTPGRDGTPGRDGIPGARGPPGPEGPPGIPGDSKLGIPGSPGEPGDIGAPGIPGNHGLDG
IPGRDGPKGDAGLSCECGPCDKGVKGEPGPEGLPGLPGIRGPPGPIGYLGERGDDGQPGP
PGLPGREGPAGQPGLPGQKGDKGEKTEALPGPPGPKGDKGQPGRPGLPGVKGETGFSGRP
GLQGFPGEKGSKGNTGFPGTPGRDGINGRKGEVGYCERGQPGADGTKGDKGEVGIPGLRG
PPGDSSSAQVIAEKGSKGPRGPVGLKGDPGIPGLAGLQGPRGPPGTPGLRGLPGQRGDKG
DIGPMGFPGDNGQPGQPGFPGRPGAKGEKGYEGRPGIGRPGQPGFPGSKGEQGLPGLPGK
TGTPGEQGQPGLPGLKGELGRPGLDGLSGMKGDKGATGLPGPIGQPGPRGLPGLDGEKGS
LGPVGPPGPLGMVGFPGAKGEPGLPGLPGVKGNSGFPGQSGTPGRPGLDGAPGREGLKGD
LGAPGLPGIAGQPGRDGLPGPPGLKGNPGLSGRPGEPGIPGREGIRGDKGDRGSMGPPGV
PGPAADKGERGPPGPKGDRGIDGLPGTPGAPGLPGQKGRDAFGPPGLAGDRGPPGPAGLP
GIDGQPGPRGSDGVSGFPGLKGDKGLRGLPGSPGDDCNPIPGPPGIQGQPGQKGNPGFNG
RDGEKGLSGNPGFPGRDGLPGAPGSKGNPGPPGLPGPPGFKGEPGFPGAKGNPGLRGTDG
PPGLRGEKGNQGLPGGSGLPGVNGAKGDKGNAGPSGPPGVPGITMKGEKGLPGLPGKPGR
NGIDGERGPKGDMGFPGLPGQRGPAGDPGIPSAKGDKGNAGFPGQPGPPGQDGRPGIIGE
KGLPGPPGERGTPGQQGPPGPFGPKGNPGLPGPPGLPCPPGSKGDKGNAGLPGLPGPKGI
RGPKGFDGLPGIVGNPGIPGVKGDPGLPGTNGRPGLPGPKGQRGLPGPQGPVGPVGPEGS
PGMPGMPGIKGDRGFDGLPGPEGPVGMKGDRGFDGPSGIPGQPGLNGRKGEPGRSCEAEQ
QFYSGTLVVRHSQTTTVPLCEEGHNRLWEGFSLLYVEGNEKAHHQDLGLAGSCVRRFSTM
PFMFCDFNNVCNYASRNDKSYWLSTNDPIPMMPVADTAIRPYISRCVVCEAPSNVIAVHS
QSLNVPQCPVGWSGMWIGYSFVMHTAAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGT
CHYFANKFSFWLATIEERDQFSRPVSETLKAGNLRTRVSRCQVCIKN
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaatggtttccccggtatcaatggtatccctggtattcctggtcccccggga
cctacaggtagaccaggattagacggatgtaatgggacagatggtgcacctggttcccca
ggtctaccaggacctccagggccacggggcttccgtggtggtgaaggcgtcaagggccag
aaaggagaacctgcaatcggacctttcccagcaggaaaaggcgaaaagggcgagcctggc
cgtgatggcagacaaggaccccagggaccacctggcccccctggcagaagaggagaagat
ggtctcccaggacagcctggagcgaagggtgaccgaggttacgatggcgagaaaggagaa
aagggtccaatgggtctagtcttcgaaggccagaaaggtgagcctggagagaagggcgaa
aaaggagacccccagaattgcgacggtgctgctcagggaggagacacaaactgtaccaca
atagttattccagggaaaaaaggtgaccgaggtgttcctggtccacaaggtccgaaagga
aacaagggagataaaggtgcccaagggcgcccgggtgattcagggccgaaaggtgaaaag
ggtctgcccggatacgtaggagctcctggtcgtgaaggtgttcctggaccccctggacca
actgggagtaaaggagataggggcccagatggtcttgatggtctgcctggtttaagagga
gaacctggtttatctggtcgtgatggacgtgatggttcaaaaggtgatcgtggtcctcct
ggaccttcaaaaggaggaccaccaggacctgttggacctcctggtttaagaggcttccct
ggccctaaaggaaaggatggtttagatggaatccctggtggacgtggaccaccgggtgtt
cctggtggtcctggacaacctggtaatcctggaagagaaggtcctccagggcttaaaggt
gacaagggtgtcagtggacttccaggtttacctggttctgaaggaccaccaggtctaccc
ggtgagcgtggtttgtctggagttcctggaccaaagggtgacaaaggatatgctattcca
ggaaccccaggacgtgatggcacaccaggccgcgatggtatcccgggagcccgtggccct
ccaggtcctgagggccctcctggtattcctggtgacagtaaattgggcatacctggatct
ccaggtgaaccaggtgacattggggcccctggtatccctggtaatcatggcttagatggt
atcccagggcgtgatggtccaaaaggtgatgctggactttcatgtgagtgtggtccatgt
gataaaggtgttaagggcgaaccaggcccagaaggcttgcctgggcttcctggaatacgc
ggccctcctggcccgattggctatcttggagaaagaggtgacgatggacaaccaggcccg
ccaggcttaccaggaagagaggggcctgcaggccagccaggattaccaggtcagaaaggt
gacaagggtgaaaagacagaggctttgccaggtcctcctggtcccaaaggagataaagga
cagcctggacgcccaggtttacctggagtcaagggagaaactggcttctcaggaagacca
ggtctacaaggttttccaggagaaaagggcagtaaaggaaacactggatttccaggcacc
cctgggagagatggtattaatgggcgtaaaggtgaggtaggctattgtgaacgtggtcag
cctggtgcagatggtacaaaaggagacaaaggtgaagttggaataccaggattacgtgga
ccacctggagactcaagctctgctcaggtgattgcagaaaaaggttccaaaggaccaaga
ggacctgttggattaaaaggagaccctggaataccaggtttagcaggattgcaaggacca
agaggcccacctggtacacctggactgcgaggattacctggtcaaagaggtgataaagga
gatattggtcctatgggattcccaggagataatggccaaccaggacaaccaggcttccct
ggacgtcctggagctaaaggtgaaaaaggttatgagggccgaccaggtattggtagacca
ggccaacctggtttccctggaagcaaaggagaacaaggtcttccaggtttacctggaaaa
acaggaactccaggagaacaaggtcagccgggattgccaggtttaaaaggtgaactggga
agaccaggtcttgatggactaagtggaatgaagggtgacaaaggagccacagggttacct
ggccctattggtcaacctggaccaagagggttaccaggtcttgatggagaaaaaggttca
cttggacctgttggacctcctggaccccttggtatggttggcttcccaggtgcaaaggga
gagcctggcttgcctggcctccctggtgttaaaggcaatagtggcttcccaggccaatca
ggtactcctggcagaccagggcttgatggtgccccaggcagagagggattaaaaggagat
cttggtgcaccaggtctaccaggtatagctggccaaccaggtcgtgatggacttccaggt
cctccaggtctcaagggtaatccagggcttagtggtagacctggagaacctggtatacct
ggtagagaaggtatcagaggagataaaggagaccgtgggtctatgggtccaccaggtgtt
cctggacctgctgctgataagggagagagagggccaccaggtccaaaaggtgatcgtgga
atagatggtttaccaggaactcctggagctccaggtctacctggtcaaaaaggacgagat
gcatttggacctccaggcctagctggagacagaggcccaccaggtcccgctggtcttcct
ggcatagatggtcaaccaggcccaagaggatctgatggtgttagtggattcccaggttta
aagggagacaagggtttgcgaggcttaccaggatcacctggagatgactgtaacccgatc
ccaggaccaccaggaattcaaggacaacctggacagaaaggaaatccaggctttaatgga
cgtgatggtgaaaaaggtttatctggaaatccaggttttcctggaagagatggattacca
ggtgctccaggttccaagggtaacccaggaccccctggcttaccaggtcctccagggttt
aaaggtgaaccaggatttcctggagccaagggtaatccaggtttacgtggaacagacggt
cccccaggtctgagaggtgaaaaaggcaaccaaggattgcctggtgggtctggacttcct
ggggttaatggtgctaagggtgataaaggcaatgctggcccaagtggacctcctggtgtc
ccaggtattacaatgaagggagaaaagggtcttccaggacttccaggtaaacctggtcgg
aatggaatagacggagaaagaggacctaagggagacatgggtttccctgggttacctggt
cagcgaggtcctgctggtgatcctggtattccaagtgctaagggagacaaaggtaatgca
ggatttccaggacagcctggtccacctggtcaagatggtaggccaggaattataggtgag
aaaggtttgcctgggccacctggtgagagaggtactcctgggcagcagggtcctcctgga
ccatttggccctaaaggtaatccaggtcttccaggacccccaggtttaccttgtcctcca
gggtctaaaggtgacaagggtaatgcagggctgcctggattgcctggaccaaaaggcatt
agaggtcccaaaggatttgatgggttaccagggatagttggaaacccaggaatccctggt
gtaaaaggagacccaggattaccaggcactaatggtcgccctggtctgcctggaccaaag
ggtcaaagaggtttaccaggaccacaaggacctgttggaccagttggtcccgagggaagt
cctggcatgccaggcatgcctggcattaaaggtgatcgtggttttgatggactgccggga
ccagaaggacctgtaggaatgaaaggagatcgtggttttgatggtccatcaggtatccct
ggacaacctggtctcaatggaagaaaaggagagcctggtagaagttgtgaagcagagcaa
cagttctattctggaacattggtagtgcgtcattcacaaacaacgacagttcctttatgt
gaagaaggccataataggctatgggaaggtttctccttgttatatgtggaaggaaatgaa
aaggcacaccaccaagatttaggtttagctggctcatgtgttagaagattcagtaccatg
ccatttatgttctgtgattttaacaatgtctgcaattatgcatctcgcaatgataaatct
tactggctatcaactaatgatcccataccgatgatgcccgttgctgacacagcaatcaga
ccatacatatcaaggtgtgtggtgtgtgaagcgccttcaaacgtaattgcagttcacagc
cagtctttaaatgtaccacagtgtccagttggctggtcaggcatgtggattggttactcg
tttgtaatgcatacggcggctggagcagaaggtggaggacaatcactcagtagccctggt
tcttgccttgaagatttcagagctactccatttattgagtgtaatggtgctagagggact
tgtcattactttgctaacaaattcagtttttggttagccactattgaggagagagaccaa
ttttctagaccagtatcagaaactcttaaagctggtaatttgcgtactagagtatcgagg
tgccaggtgtgcataaaaaactag
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