Macrobrachium nipponense (oriental river prawn): 135227082
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Entry
135227082 CDS
T09903
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz04512
ECM-receptor interaction
mnz04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135227082
04518 Integrin signaling
135227082
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mnz00536
]
135227082
Glycosaminoglycan binding proteins [BR:
mnz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135227082
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
FnI_RECK
TILa
Motif
Other DBs
NCBI-GeneID:
135227082
NCBI-ProteinID:
XP_064122994
LinkDB
All DBs
Position
20:complement(67016573..67045720)
Genome browser
AA seq
1507 aa
AA seq
DB search
MWRLHDPAAGRPPLVAALALLFLLLVARAARAEPEPEAKPQEYDEYYDGYDEYYNYENGP
REPEEPGLSTECTFEDQTYADGESFMPDDCTRCTCAGGQVSCERTPCDDNCVGVLCEEVE
CEDQYIPLGQCCPVCPEQPQPPPPEIVGPAPDYASSTTGDSGVPGPPGDRGPSGNPGTPG
IPGDPGPPGPMPDISPWLSQLSQSQGGEKGPQPDPFSYLQAQVGPVGPRGPVGSPGPPGP
QGFQGMRGEPGDPGPGGPGGPPGPRGLPGIPGKDGDNGDDGAPGPQGSVGPPGPRGLPGM
PGLPGVKGHRGFPGLDGAKGEQGTSGDKGAAGPGGPPGPIGPMGSAGPRGERGREGPPGP
PGLRGIDGIAGPPGPPGGPGKPGPPGFPGSAGAKGDQGVQGPKGSQGLQGPRGEAGKPGV
PGEAGSQGPPGKDGLVGEKGAPGAQGDAGPPGFPGARGPPGLPGSPGTPGVKGEAGLQGE
RGFKGELGMKGELGTPGPRGLPGAPGSPGKRGKRGMRGPPGGAGPQGERGPPGGRGLPGA
DGPPGPKGQSGDAGPVGAAGQKGREGNPGPPGLPGRQGLRGPTGLSGPAGKTGRPGDRGP
PGADGKSGDQGPQGIQGLPGPMGPPGPRGQIGEPGKDGSVGETGPTGPRGDPGKDGAQGT
VGSPGPQGASGERGPPGPPGARGFQGLPGSPGATGSAGKDGEAGLQGPRGLPGTAGLRGS
RGFPGERGAQGPPGENGARGEPGLPGPDGPAGPAGPAGQKGHAGPSGLVGLPGGRGAPGL
PGEKGERGGAGPVGPEGPPGRQGDQGPQGVMGPPGPQGEPAEKGDPGPSGPPGEPGANGM
MGERGPQGQQGIQGFPGPIGPPGAAGPKGQRGLPGQKGSQGNTGLVGQPGEAGPQGLAGL
PGAKGQRGEIGTRGEPGLMGPPGRPGNPGTPGNNGEAGQPGAEGQPGIKGAPGDTGRPGL
PGPSGQPGAPGVEGPKGEAGPMGRSGPVGQPGPIGASGERGLPGLPGPPGPTGLSGKTGE
RGEPGMEGKRGAEGPVGPPGLAGPVGPIGPTGDTGSPGADGKPGPPGIGGRTGDKGPPGP
PGSQGSPGPAGLPGPPGSAGPIGPTGERGDRGEVGPQGVEGSPGPRGKPGSPGMQGEKGE
TGAAGPKGAKGHRGLIGLQGLPGPQGPPGEKGVPGVAGPPGPSGEPGTKGPPGRDGGIGL
QGIMGPPGPRGPSGEEGGVGPSGPPGPPGPPGPPGESMGYDAAALAVLLGQGQSKGPDPI
QGDDSELPARLFGKEITDDERRDLITKAYEQLKTSFKKFLKPSGTKDAPAKTCKDLAYAH
PELPSGEYWIDPNEGDTKDAIVVYCDMEEKATCVLPQPAMTEEFNYVTSDKGAKWLGEDI
SPGFEFTYKADSNQMSFLQLLSASASQELTYHCKNSIAVFDAQKRSFRNALKIMTATDHE
LKARGSNKFRYRVLEDGCKTASDAWSFTKIAYRTDKPQRLPFNDIGLQDVGSPNQSFKIE
IGPVCFS
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggctacacgaccccgccgcagggcggccgcccttggtcgccgccctcgcgctc
ctcttcctcctcctggtcgctcgcgccgcccgcgccgagcctgaacccgaagccaagccc
caagaatacgacgagtactatgacggttacgatgaatattacaactacgaaaacggcccc
agagagccggaggaacccggccttagcaccgaatgcacgttcgaggaccaaacgtacgct
gacggcgagtccttcatgcctgacgactgcacacgctgcacctgtgcaggaggacaggtc
agctgcgagcggacgccttgcgacgacaattgcgtcggggttctgtgtgaggaggtcgag
tgcgaggaccagtacattcccttaggccagtgctgcccggtgtgtccagagcaacctcaa
ccaccacccccggaaatcgttggcccagccccagattatgcttcctctacaactggtgac
tctggagtacctggacccccaggtgaccgtggcccatcaggcaaccctggtacgccaggt
attcctggagatcctggtccgcctggtcccatgcctgatatttctccatggttgtctcag
ctgtctcagtcccaaggaggcgagaagggcccacagcctgatcctttcagctatctacaa
gcccaagttggtccggttggtcccagaggcccagtagggtcacctggaccccctggccca
cagggtttccaaggaatgcgtggtgagcctggtgatcctggacctggtggccctggagga
ccacctggaccaagaggtctccctggaatacccggcaaagatggagataatggtgacgat
ggtgcccctggaccgcaaggaagtgttggacccccaggaccccgtggtttacccggaatg
cccggtctcccgggtgtgaaaggtcaccgtggtttcccaggcttggatggcgcaaaggga
gaacaaggtacttctggtgataagggtgctgccggacctggaggtcccccaggacctatt
ggacccatgggatctgctggcccccgaggtgaaagaggaagagaaggtccacctggtcct
cctggtctcaggggaattgatggaattgctgggccaccaggtccccctggaggtcccggt
aagcctggacctcctggattcccgggaagcgctggtgccaaaggagaccaaggtgtacaa
ggacccaaaggctctcaaggcctccagggcccaagaggtgaagcaggtaaacctggtgtc
ccaggagaggctggttctcaaggtccccccggaaaagatggtctagttggtgaaaagggt
gccccaggagctcaaggagatgctggtccacctggcttccctggtgctcgagggcctcct
ggattacctggtagccctggtacgcctggcgtcaaaggagaggcgggtctacaaggagag
agaggtttcaagggagaacttggtatgaagggtgaacttggaactccaggcccccgtggt
cttccaggagctccaggttctcctggtaaacgtggtaagagaggcatgcgtggaccccca
ggaggtgcaggcccacagggtgaacgtggaccccctggtggacgaggtcttcctggtgct
gatggccctcctggacctaaaggtcagtctggtgatgctgggcctgttggtgcagctggt
caaaaaggacgtgaaggaaacccaggtccacctggattaccaggcagacagggtttgagg
ggtccaacaggtctttcagggcctgctggtaaaacgggtcgccctggagatcgtgggccc
cctggtgctgatggaaagtctggagaccaaggaccccaaggtatccaagggttacctggt
ccaatgggacctcctggaccacgtggacaaatcggagaacccggcaaagatggcagcgtt
ggtgaaacaggtccaactggtcctcgtggagaccctggaaaggatggtgcccaaggcaca
gtgggttcacctggtcctcaaggagcttctggcgaacgtggaccaccaggacctcctggt
gctcgtggattccaagggttacctggctctccaggagccaccggatcagctggtaaagat
ggtgaagcaggtttacaaggtccccgaggattaccaggtaccgcaggactccgaggatca
agaggtttcccaggagaaagaggtgctcaaggtcccccaggagaaaatggagctcgagga
gaaccaggcttgcctggccctgatggacctgccggtcctgctgggccagctggtcaaaaa
ggtcatgcaggcccctcaggtcttgttggccttcctggtggtcgaggcgctcccggtctt
cctggagaaaaaggtgaacgtggtggagctggtcctgttggacctgaaggtcctcctggt
cgtcaaggtgatcaagggcctcaaggtgtaatgggtccaccaggtccccaaggagaacct
gcagagaaaggagatccaggcccatctggacctcctggtgaacctggagcaaatggcatg
atgggagaacgtggaccacaaggacaacaaggtattcagggcttccctggaccaattgga
cctcctggggcagctggaccaaaaggtcaacgcggtcttcctggtcaaaaaggatcgcaa
ggaaacaccggacttgttgggcaacctggtgaagctggtccacagggtctagcaggtctc
ccaggcgccaaaggacaacgaggtgaaataggaactcgaggagaaccaggcctaatgggt
ccacctggaaggcctggtaacccaggtactcctggcaataatggtgaagctggtcaacct
ggtgctgaaggtcaacctggaatcaaaggtgcccctggtgatactggacgacctggatta
cccggtccaagtggacaacccggagcacccggagtggaaggtccgaaaggagaagctgga
ccaatgggacggtctggaccagttggtcagcctggacccatcggagcttcaggagaacga
ggactacctgggttacctggtcccccaggtcctacaggcttatctggaaagacaggtgaa
cgtggagagcccggtatggaaggcaagcgaggtgcagaaggtcctgtgggtcccccaggc
ttagctggcccagttggtcctattggtcccactggtgacactggttcccctggtgctgat
ggtaaacctggtccacctggtattggcggtcgaactggagacaagggaccaccaggtcct
ccaggttctcaaggatcaccaggccctgccggacttcctggaccaccaggttctgctggc
cccattggtcccactggagaacgaggcgaccgtggtgaagtaggtccacagggagtagag
ggttcacctggacctcgtggcaagcctggttcacctggcatgcaaggagaaaagggagag
accggggctgctggtcctaaaggtgctaaaggtcatcgaggtctcattggtcttcaaggt
cttcctggtcctcagggtccacctggtgaaaagggtgtgcctggagttgctggtccccct
ggtccatctggagagcctggcacaaaaggtccccctggtcgcgatggaggtattggtttg
caaggtattatgggtcccccaggtcctcgtggtccaagtggtgaagagggtggggttggt
ccttcaggtccacctggtcctcctggtcccccaggtccacctggcgagtccatgggctat
gacgcagccgcactcgcagttctgcttggccaaggccaatcaaagggtcctgatcccatc
cagggagatgattccgaactacctgctcgcctcttcggaaaggagattacggatgacgag
cgaagagatctgatcaccaaagcttacgagcaactcaagacatctttcaaaaagttcctc
aaaccatcaggcacgaaggatgccccagcaaagacctgcaaagatcttgcttacgctcat
ccagagctgcctagtggcgagtactggattgatcctaacgagggcgacacaaaggatgcc
atcgtagtttattgcgacatggaagagaaggccacctgtgtcctacctcagcctgctatg
accgaagagttcaactacgtcactagcgacaaaggtgctaaatggctcggcgaagacatc
agtccaggtttcgagttcacgtacaaagctgacagcaaccagatgtccttcctgcaattg
ctctctgcatctgcctcccaagagttgacctaccattgtaagaactccattgctgtcttc
gacgcccagaagaggagcttcaggaatgctctcaagatcatgacggccaccgatcatgag
ctgaaggccagaggaagtaacaagttcagatacagagtcttggaggacggctgtaagacc
gcatccgacgcctggtcgttcacgaagattgcgtaccgcaccgacaagcctcaacggtta
ccgttcaacgacatcggactccaagacgtcggttcgccgaaccagtcattcaagatcgag
attggtccggtgtgtttctcatag
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