Metamycoplasma orale: NCTC10112_00054
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Entry
NCTC10112_00054 CDS
T08183
Symbol
vacB
Name
(GenBank) VacB-like exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mob
Metamycoplasma orale
Pathway
mob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10112_00054 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mob03019
]
NCTC10112_00054 (vacB)
03016 Transfer RNA biogenesis [BR:
mob03016
]
NCTC10112_00054 (vacB)
Enzymes [BR:
mob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC10112_00054 (vacB)
Messenger RNA biogenesis [BR:
mob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10112_00054 (vacB)
Transfer RNA biogenesis [BR:
mob03016
]
Prokaryotic type
tRNA degradation factors
NCTC10112_00054 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
eRF1_2
Motif
Other DBs
NCBI-ProteinID:
VEU55174
UniProt:
A0A448ZVB0
LinkDB
All DBs
Position
1:53837..56035
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AA seq
732 aa
AA seq
DB search
MNSYNNKNKNFSHHDHENLKPIEENKVLDFITKNYGATFLDIARGLKIHFSLNNKLTNLL
RKLCDEKKIDVLKNQGYYALKFVKEDVFTISITAKRLGFIDFEQNEDGSFKSAFLYSDQL
KNILDKDEVLANIYSYINDKDETLYKASIINVVKHTITKVVGIFLLSYKGKRQFVALDER
NKTNFLISNLEKLNHSQIKNNYDVVSCIVVQPSPNKHNSKDYVELVFDKKIATLDDKDYV
VKKIMTTNNVNETFSDELTEAIKEIPKFVSDKEISERKNLIDLPTVTIDGLDTKDFDDAI
SCYKKGEVYKLFIHIADVSYYVKENSPIDNEALLRGTSIYLPTKVIPMLPFELSNGICSL
NPNEIRCCITLELDIDKKGNNIAQNIYPSVIKSNYRLTYNEVNDYYEGKITTIPNDIKNN
LNDAKDLSKIILDKKINEGYVDFEIEEAKIIMENETTVKDIVIRKDGISEKLIEAFMIRA
NETVAKMMFDKGYPSIYRVHDKPSPDKLLMLQDLIKFSHYKDVNVPFDGDPKSFQIMVQK
LKEQSFNDFIKSALLRTMQKAIYSSKNIGHFGLASKEYSHFTSPIRRYPDLLIHRLIRKF
IFEKKYKEDKYEEELDNITRISALNSEAEKNAMQVERDVVDFWKSNFFEKFINKTFDAMA
ISVEKFGIFFNIDEYQTSVLVRFDSIIEDSVSAISQFEAKGNKLNIRVGKIYKILIESID
KDKGKINAKLVI
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaattcctataataataaaaataaaaatttttctcatcatgatcatgaaaatctaaaa
cctattgaagaaaataaggttttagattttattactaaaaattatggagcaactttttta
gatatagctcgaggcttaaaaattcacttttcattaaataataaattaacaaatttatta
cgcaaactttgtgatgaaaagaaaatagatgttttaaaaaatcaaggttattatgcgctt
aagtttgtcaaagaagatgtatttacaatatctataactgcaaaacgtttaggatttata
gattttgagcaaaacgaagatggttcatttaaatcagcttttttatattcagaccaactt
aaaaatattttagataaagacgaagttctagctaatatctatagttatattaatgataaa
gatgaaactttatataaagccagcattataaatgtagttaaacatacaataactaaagtt
gttggtatttttttactatcttataaaggtaaaagacagtttgtggctttagatgaaaga
aataaaactaattttcttatttctaatttagaaaaacttaatcactctcaaataaaaaat
aattatgatgtagtttcttgtattgttgtacagcctagtcctaataaacacaattctaaa
gattatgttgaattagtatttgataaaaaaattgcaacactagatgataaagattatgtg
gttaaaaaaataatgactacaaataatgttaatgaaacatttagcgatgaacttacagag
gcaattaaagaaataccaaaatttgttagtgataaagaaattagcgaaagaaaaaatctt
attgatttacctactgttacaattgatggcctagatactaaagactttgatgatgcaatt
tcttgttataaaaaaggcgaagtatataaattatttatacatatcgcggatgtttcttat
tatgttaaagaaaatagtccaatagataatgaagctttattaagaggcacaagtatttat
ttaccaactaaagttatacctatgctaccatttgaactttctaatggtatttgttctctt
aatcctaatgaaattagatgttgtattactttagaacttgacattgataaaaaaggtaac
aatattgctcaaaacatatatccatcagttattaaatcaaattatcgtctaacttataat
gaagttaatgattattatgaaggtaaaattactaccattcctaatgatattaaaaacaac
ttaaatgatgctaaagatttatctaaaattattttagataaaaaaattaacgaaggttat
gtggattttgaaattgaagaagctaaaatcatcatggaaaatgaaacaactgttaaagac
attgttattagaaaagatggaattagcgaaaaattaattgaagcatttatgattagagca
aatgaaactgttgctaaaatgatgtttgataaaggttatccttcaatttatagagtacat
gataaaccaagtcctgataaacttttaatgttacaagatttaattaaattttcacattat
aaagatgttaatgtaccttttgatggtgatcctaaatctttccaaataatggttcaaaaa
ttaaaagaacaaagttttaatgattttattaaatcggcattattaagaacgatgcaaaaa
gcgatatattcttctaaaaatattggacactttggattagcttcaaaagaatattctcac
tttacatcgccaatacgaagataccctgacttattaatacatagattaataagaaaattt
atctttgaaaaaaaatataaggaagataaatacgaagaagaattagataatataactcgt
atttctgcacttaattcagaagctgaaaaaaatgcaatgcaagttgaaagagatgtcgtt
gatttttgaaaatctaacttttttgaaaagtttataaataaaacttttgatgcaatggca
atcagtgttgaaaaatttggaatattttttaatatagatgaatatcaaactagcgtacta
gtaagatttgattctattatagaagattctgtatctgctatttcgcaatttgaagccaaa
ggaaacaagctaaatataagagttggaaaaatatataaaatattaatcgaatctattgat
aaagacaaaggaaaaattaatgccaaattagttatctaa
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