Microvirga ossetica: BB934_05005
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Entry
BB934_05005 CDS
T05139
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
moc
Microvirga ossetica
Pathway
moc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
moc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB934_05005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
moc03019
]
BB934_05005
Enzymes [BR:
moc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BB934_05005
Messenger RNA biogenesis [BR:
moc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BB934_05005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ANY77670
UniProt:
A0A1B2ECG1
LinkDB
All DBs
Position
complement(1085749..1087242)
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AA seq
497 aa
AA seq
DB search
MTLFTDFGLAQPILKALTAEGYEKPTPIQAQTIPYAMEGRDVCGIAQTGTGKTAAFALPI
LHRLNANPKPRRPKSPRVLVLSPTRELASQIADSFRVYGRNLRLTTEVVFGGVTISRQEK
ALASGVDVLVATPGRLIDLIDRRALSLRDIEILVLDEADQMLDLGFIHALKRIVTLLPKE
RQSLFFSATMPKTISTLAESFLRNPAHVAVTPVATTAERVEQSVIFVQTGRKQVLLETLL
RDPSIERVLVFTRTKHGADKVVRGLDKAGIAGAAIHGNKSQPQRERALAGFRDGSCRVLV
ATDIAARGIDVEGVSHVINYDLPNVPESYVHRIGRTARAGATGLAISFCNDEEKAYLKDI
EKLTRLKVPVQALPEGLPAASAASETSERREPQRGRPAPHARGHQGHGQSRSADPNAERG
PKRRRGHGGKPGGNAQPQGGQPAGNQQRPAQGQRPAQGQRPAQGQRSAQGKPASGRQDGR
RGDGAQVAWLEKSPRRR
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgacacttttcaccgatttcggattggcccagccgatcctgaaggccttgactgccgaa
ggctatgagaagcccacgccgatccaggcccagaccattccctatgccatggaaggtcgc
gacgtctgcggcatcgcccagaccggcaccggcaagacggccgccttcgcgctgccgatc
ctgcatcgcctgaatgcgaacccgaagccgcgccggcccaagagtccccgcgtgctcgtg
ctcagcccgacccgtgaactcgccagccagatcgccgacagcttccgtgtctacggccgt
aacctccggctcaccaccgaggtggtgttcggcggcgtcacgatctcccgccaggagaag
gcgctggccagtggcgtcgacgttctcgtggccacccccggccgcctgatcgacctcatc
gaccgcagggcgctgtccttacgcgacatcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccatgcgctgaagcgcatcgtgacgctgctgccgaaggag
cgccagagcctgttcttctcggccaccatgccgaagacgatctcgacgctcgccgaatcg
ttcctgcgcaatccggcgcatgtggccgtcactccggtggcgaccaccgccgaacgcgtg
gagcagagcgtgatcttcgtgcagaccggccgcaagcaggtcctgctcgaaacgctcctg
cgcgatccgtccatcgagcgcgtcctcgtcttcacccgcaccaagcatggtgcggacaag
gtggtgcgcggcctcgacaaggccggcatcgcaggagcagccatccacggcaacaagtcg
cagccgcagcgcgagcgtgcgcttgcgggcttccgtgacggctcgtgccgggttctggtc
gcgaccgacatcgccgcgcgcggcatcgacgtcgagggcgtttcccacgtcatcaactac
gacctgccgaacgtgcctgagtcctacgtccaccgcatcggccgtacggcgcgtgccggc
gcgaccggccttgcgatctcgttctgcaacgacgaggaaaaggcgtacctgaaggacatc
gagaagctgacccgtctcaaggtgccggtccaggccctgccggaagggcttcccgccgct
tcggcagcttccgagacctctgagcgtcgcgagccgcagcgcggtcgtccggctccccac
gcccgcgggcatcagggccatggccagtcgcgcagtgccgatccgaacgccgagcggggc
ccgaagcgccgccgcggtcacggcggaaagcccggcggcaatgctcagccgcagggtggc
cagcccgccgggaaccagcagcgtccggcacaggggcagcgtccggcacaggggcagcgt
ccggcacagggccagcgctccgctcaaggaaagccggcctccggccgtcaggacggacgc
cgcggagatggggcccaggtggcctggctcgaaaagagcccccgccgccgctaa
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