Microvirga ossetica: BB934_20130
Help
Entry
BB934_20130 CDS
T05139
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
moc
Microvirga ossetica
Pathway
moc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
moc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BB934_20130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
moc03400
]
BB934_20130
Enzymes [BR:
moc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BB934_20130
DNA repair and recombination proteins [BR:
moc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BB934_20130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANY80250
LinkDB
All DBs
Position
complement(4275032..4276606)
Genome browser
AA seq
524 aa
AA seq
DB search
MAKLAAYRAKRDFTKTSEPAGKASRRRGASFVVQKHDASRLHYDFRLELDGTLKSWAVAK
GPSLVKGEKRLAVQVEDHPLSYGDFEGTIPEGQYGGGTVLLWDRGTWEPEGDPHEGIEKG
RLTFRLDGEKLQGTWHLVRMAKRPRERQESWLLIKADDSYARTEDDPDILEEAPLSVKTG
RSIEEIGPAQPAKSPAKRKAPAKKAAATKSDKPAKRAAASAKPAKDDGAVDVAGVRLTHP
DRVLWEDQGLTKQELAEYYLDIAEWLLPHLANRPLTLIRCPGGAEKKCFVQRHSWAGMSD
FIHRTMIPDNSGEHEALSVTDIQGVVALVQSGVLEMHVWGATLSDLERPDRLVFDFDPGE
GVEWPRVIEGALALRARLEAMDLASFVKTTGGKGLHVVVPLKPKAEWKDALAFTRKIAEA
MAGDEPERYTTTSVKQVREGRIFIDYLRNNREASAVAPYSTRSRPGAPVATPVDWKELTP
DLKPNGYTIDNIGRRLASLKRDPWADMGKIDQVLPEIRASKKKR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagctcgcagcttatcgcgccaagcgcgacttcacgaaaacctcggagccggca
ggcaaggcctcccggcgccgcggcgcctccttcgtcgtgcagaagcacgatgcctctcgc
ctccactacgatttccgtcttgagctcgacggcaccctgaagagctgggcggtggccaag
ggcccgagcctggtcaaaggtgagaaacgcctcgccgttcaggtcgaggaccatcccctc
agctacggcgatttcgagggcaccattcccgaaggccagtatggcggcggtaccgttctg
ctgtgggaccgtggaacctgggagccggagggcgacccgcatgagggcatcgagaagggc
cgcctcaccttccgcctcgacggtgagaagctgcaaggcacctggcatctggtccgcatg
gccaagcgcccgcgtgagcgccaggaatcatggctcctgatcaaggccgacgattcctat
gcccgcacagaggacgatccggatatcctcgaggaggctcccttgtcggtaaagaccggc
cgttcgattgaggagatcggacctgctcagccagcgaagagccccgccaagcggaaagcc
ccagcgaagaaagcggccgcaacgaaatccgacaaacccgcgaagcgcgctgccgcttcc
gccaaacccgccaaggacgatggcgccgtcgacgtggccggcgtgaggctgacccatccg
gaccgggtactatgggaggaccagggcctcaccaagcaggagctggccgagtattatctg
gacatcgccgagtggcttctgccgcatctggcgaaccgccccctcacgctcatccgctgc
ccaggcggcgcagaaaagaaatgcttcgtccagcgtcattcctgggcaggcatgagcgat
ttcatccaccgtaccatgatcccggacaacagcggcgagcacgaggctctgtctgtcacc
gacatccagggcgtcgtcgccctcgtgcaatccggcgttctggagatgcatgtctggggc
gcgacgctgtccgatctggaacggcccgaccgcctcgtcttcgacttcgatccgggcgaa
ggcgtggaatggccgcgcgtgatcgaaggagcgcttgcgcttcgcgcccgcctggaagcc
atggatcttgcaagcttcgtcaagaccaccggcggcaagggacttcatgtggtcgtgccc
ctcaagccgaaggccgagtggaaggatgccctcgctttcacccgaaagatcgccgaagcg
atggccggcgacgagcccgagcgctacactacgacctcggtgaaacaggtacgggagggc
aggatcttcatcgactacctgcgcaacaaccgcgaggcttcggcggtggcaccctattcg
acccgatcccgcccaggcgctcccgtcgccacgcctgtggactggaaggaactgacgccc
gatctcaagcccaacggctacacaatcgacaatatcggcaggcgtcttgcctcgctcaag
cgggatccctgggccgatatgggcaagatcgatcaggttctgcctgagatccgagcctcg
aagaaaaagcggtaa
DBGET
integrated database retrieval system
