Microvirga ossetica: BB934_20880
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Entry
BB934_20880 CDS
T05139
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
moc
Microvirga ossetica
Pathway
moc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
moc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BB934_20880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
moc03021
]
BB934_20880
03400 DNA repair and recombination proteins [BR:
moc03400
]
BB934_20880
Enzymes [BR:
moc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BB934_20880
Transcription machinery [BR:
moc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BB934_20880
DNA repair and recombination proteins [BR:
moc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BB934_20880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ANY80382
UniProt:
A0A1B2EKN8
LinkDB
All DBs
Position
4423937..4428112
Genome browser
AA seq
1391 aa
AA seq
DB search
MNQEVMNLFNQTAQPQSFDQIKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFESYIVVDAGLTPLKDRQLLTEEEYIRAQDEYGEDSFTA
MIGAEAIRRILQELDLEKTAQDIREEIAVTTSELKPKKLMKRLKIIEAFVQSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYAKLDARGLSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVSDGQPGQGKAFADMGEIEHALN
EKVITLHTKIRYRWEGLDEDGKPVSKIVDTTAGRVMLSRLLPKHPMLPFDVVNKLMTKKE
ISNMIDAVYRHCGQKESVIFCDRIMGLGFYNAFKAGISFGKDDMVIPENKWEIVEETRSL
AKDYEQQYQDGLITQGEKYNKVVDAWAKCSDRLAAEMMNRISTVQKDENGRDKPVNSIYM
MSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAVIREPDCGTERGIKMRAIIDAGQVVASLASRILGRST
AEDLVAQDGTVIVPQGTMIEEQHLEAIGAAGIQEVKIRSVLVCESKNGVCATCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFIESSFEGKIGFRNKNIA
RNSDGDLVVMGRNVAVVITGADGAERAVHRLQYGSRLKVDEGDTIKRGQRIAEWDPYSRP
ILTEIDGTVGYEDLVDGGSMIESMDESTGIAKRVVIDWRGSPRTADLRPAVVIQGSGGKV
AKVARGGDARYLLPVDAILASDPGSKVKAGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEKSGTIQFGRDYKSKRRLTLNPHDGSEPVEYLIPKGKHIHLQDGDVVEVGD
FIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITD
GGDSELLAGEQVDRLELEEINERLVSEKKKPADGVPVLLGITKASLQTRSFISAASFQET
TRVLTEAAVNGKVDTLEGLKENVIVGSLIPAGTGALTSQIKAVATHRDELILQQKRSESQ
AQVSELPPAAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaggtcatgaatctcttcaaccagacggcccagccgcagagcttcgatcag
atcaagatctcgatcgcgagccctgagaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgtacgttcaagcccgagcgcgacggcttgttctgcgcg
cgcatcttcggtcccatcaaggactacgagtgcctgtgcggcaagtataagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtgacgctggcccgcgtccgtcgc
gatcgcatgggtcacatcgagctcgccgcccccgtcgctcacatctggttcctgaagtcc
ctgccgagccgcatcggtctgctgctcgacatgaccctgaaggatctggagcgcatcctc
tatttcgagtcctacatcgtcgtcgatgcgggcctgacgccgctcaaggaccgtcagctc
ctcaccgaggaggaatatatccgcgctcaggacgagtacggtgaagattcctttacggcc
atgatcggcgcggaagcgatccgccggatcctgcaggagctcgacctcgagaagaccgcg
caggacatccgcgaggagatcgcggtcaccacgtccgagctgaagcccaagaagctcatg
aagcgcctcaagatcatcgaggccttcgtccagtcgggcaacaagcccgagtggatgatc
atgaccgtcgttccggtgatcccgccggacctgcgtccgctcgtgccgctcgacggcggc
cgcttcgcgacctcggacctgaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctcatggagctgcgcgctccggacatcatcgtccgcaacgagaagcgcatg
ctgcaggaggcggtcgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggt
ccggagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgccaagctcgacgcacgcggcctgtccgccaccgtcaagcaggcgaag
aagctcgtcgagaaggagaagccggaagtctgggatatcctggacgaggtcatccgcgag
catccggttctcctgaaccgcgctccgaccctgcaccgtctcggcatccaggccttcgag
cccaccctcatcgagggcaaggcgatccagctgcacccgctcgtctgcgccgcgttcaac
gcggacttcgacggcgaccagatggccgtccacgtgccgctctcgctcgaggcgcagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggccaacgggcagccg
atcatcgtgccgtcgcaggacatcgttctcggcctttactatctctccatcgtctccgac
ggtcagcccggccagggcaaggccttcgccgacatgggcgagatcgagcatgccctgaac
gagaaggtcatcacgctccacaccaagatccgctaccgctgggaaggcctggacgaggac
ggcaagccggtgtcgaagatcgtcgacaccacggccggccgcgtcatgctctcgcgcctg
ctgccgaagcacccgatgcttcccttcgacgtcgtgaacaagctcatgacgaagaaggag
atctccaacatgatcgatgccgtctatcggcattgcggtcagaaggagtcggtgatcttc
tgcgatcgcatcatgggcctcgggttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtgatcccggagaacaagtgggagatcgtcgaggagacccgttccctc
gcgaaggactacgagcagcagtaccaggacggcctcatcacccagggcgagaagtacaac
aaggttgtcgacgcctgggcgaagtgctcggaccgcctcgcggccgagatgatgaaccgc
atctccacggtgcagaaggacgagaacggccgcgacaagccggtcaactcgatctacatg
atgtcccactcgggcgctcgtggttcgccggcgcagatgaagcagctcgcggcgatgcgc
ggcctcatggccaagccgtccggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctcgacgttctcgagtacttcaactcgacccacggcgcccgtaagggcctggcc
gacaccgcgctcaagacggcgaactcaggctacctgacccgccgcctcgtcgacgtggcg
caggacgcggtcatccgtgagccggattgcggcaccgagaggggcatcaagatgcgcgcc
atcatcgacgccggccaagtggtcgcgtcgctggcttcgcgcatcctcggccgctcgacg
gctgaggatctggttgcccaggacggcaccgtcatcgttccgcagggcacgatgatcgaa
gagcagcacctcgaggcgatcggcgctgccggcatccaggaggtgaagatccgctccgtg
ctcgtctgcgagtcgaagaacggcgtctgcgccacctgctacggccgcgacctggcccgg
ggaaccccggtcaaccacggcgaggctgtcggcgtcatcgctgcgcagtccatcggcgag
ccgggcacgcagctcaccatgcgtaccttccacatcggcggtgcggctcagatcgcggat
tcgtccttcatcgagtcgagcttcgaaggcaagatcggcttccgcaacaagaacatcgcg
cgcaactcggacggggatctcgtcgtcatgggccgcaacgtggctgttgtgatcaccggt
gcggacggcgccgagcgggcggttcaccgcctgcaatacggctcccgcctgaaggtggac
gagggcgacacgatcaagcgcggtcagcgcattgccgagtgggacccttactcccgtccg
atcctcacggagatcgacggtacggtgggctacgaggatctcgtcgacggcggatcgatg
atcgagtcgatggacgagtcgaccggcatcgccaagcgcgtggtcatcgactggcgcggt
tctccccgtacggcggacctgcgtccggcggtggtcatccagggctccggcggcaaggtg
gccaaggtcgcccgcggcggcgacgcccgctaccttctgcccgtggatgcgattctcgcg
tcggatccaggctcgaaggtcaaggccggcgatatcctcgcccgtgtctcgaccgagagc
gccaagacccgcgacatcacgggcggtctgccgcgcgtggcggagctgttcgaggcccgt
cgtccgaaggatgcggccatcatcgcggagaagtccggcacgatccagttcggccgtgac
tacaagagcaagcgtcgtctgacgctgaacccgcacgatggttcggagccggtggagtac
ctgatcccgaagggcaagcacatccacctgcaggacggtgacgtggtcgaggtcggcgac
ttcatcgtcgacggcaacccggcaccgcacgacatcctggcgatcaagggcgtcgaggag
ctcgcagcttacctcgtgaacgagatccaggaggtctaccgcctccagggcgtgctcatc
aacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgac
ggcggcgattccgagctgctcgccggcgagcaggtggaccgcctcgagctcgaggagatc
aacgagcgtctggtgtccgagaagaagaagcccgccgacggcgtgccggttctgctcggt
atcaccaaggcctcgctgcagacccgctccttcatctcggcagcgtcgttccaggagacc
acccgcgtcctcacggaggcggcggtcaacggcaaggtcgatacgctagagggcctgaag
gagaacgtgatcgtcggcagcctgatccccgccggcaccggtgccctgacgtctcagatc
aaggccgtggcgacccatcgcgacgaactgatcctgcagcagaagcgctccgagtcccag
gctcaggtcagcgagctgccgcctgcagccgagtaa
DBGET
integrated database retrieval system
