Mesomycoplasma ovipneumoniae: NCTC10151_00774
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Entry
NCTC10151_00774 CDS
T08113
Symbol
vacB
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
moe
Mesomycoplasma ovipneumoniae
Pathway
moe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
moe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10151_00774 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
moe03019
]
NCTC10151_00774 (vacB)
03016 Transfer RNA biogenesis [BR:
moe03016
]
NCTC10151_00774 (vacB)
Enzymes [BR:
moe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC10151_00774 (vacB)
Messenger RNA biogenesis [BR:
moe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10151_00774 (vacB)
Transfer RNA biogenesis [BR:
moe03016
]
Prokaryotic type
tRNA degradation factors
NCTC10151_00774 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
EPCAM-Trop-2_C
Motif
Other DBs
NCBI-ProteinID:
VEU72201
LinkDB
All DBs
Position
4:1050649..1052739
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AA seq
696 aa
AA seq
DB search
MEIISQEKLKNFLKNEKTFIEIVRKFNVPFDLNQHLTHQISALIENFQVFKTLEGKYYWP
KFIETRVGIFRATQSSFGFVEDKQNPAQKNNIFIPGRFTANALEGDEVKINIYVDRFKSD
QFFGVVTKIIQRNTKFLIGKVVKNDKFWDFQPINFKGNFFFRWNSTQDLEINNFYKVKII
DYQKNVLKLDVIQKIGHKSEPFLHVKIPIIESEIADTFSPEVLAESSKIEQEIKNIDKNR
VDLRNELVVTIDGDDTKDFDDAISIEQTKEGNFLLKVHIADVAHYVKQDSAIDIEAQKRG
TSIYLPHMVIPMLPEELSNGICSLMPSVDRFTITMESLINKKGENLYIKIYPSIINSKWR
LTYEKVNNFFAGSFSFGDTDLENMLKKCLNLNTILSNFKKKQGYIDLALDEIKIILDQEG
YTQSLKLKRRGISEELIENFMIRANENVSEFLTKKKIPILYRIHANPDPEKITIFNQVIK
SLGIQHSLKLNPSSKEFAHKINQIKLENNDNFLKYSILRTMQKAIYSTENEGHFGLAASF
YSHFTSPIRRYPDLLLHRIIRNFLFQKNDDIETYKEILEKNSYTTTELEQKAFNLERKIV
NIKKAEYVQNLIGKSFRAQITSIIKSGFFVEIDGMFDALIVNKTLPDSENDPYVLAEDNF
CLYNKKHRFKLGEFIDVKIESANIWDGKISAILTNY
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaaattatatctcaagaaaaactcaaaaattttcttaaaaacgaaaagacttttatt
gaaattgttagaaaatttaacgttccttttgacttaaatcaacatttgacacaccaaata
agcgctttaattgaaaatttccaggttttcaaaaccctagaaggcaaatattattgacct
aaatttatagaaactcgggttggtattttccgcgctacccaatcctcgtttggttttgtt
gaagataaacaaaatccagcccaaaaaaataatatttttatacccggaagatttactgca
aatgctcttgagggtgatgaagtcaaaattaatatttatgttgacagattcaaaagtgat
caatttttcggtgttgttactaaaattattcagcgaaacactaagtttttaattggaaaa
gttgttaaaaacgataaattttgagattttcagcctattaattttaaggggaattttttc
tttcgttgaaattcaactcaagatctagaaatcaataatttttataaagtaaaaattatt
gattatcaaaaaaatgtgctaaaactagatgttattcaaaaaattggacacaaatcagag
ccttttttacatgtaaaaattcctataattgaatcagaaatcgctgatacatttagccca
gaagttctagctgaatcttcaaaaattgaacaagaaataaaaaatatcgacaaaaacaga
gtagatttacgaaatgaacttgtggtaacaatcgatggcgacgatacaaaagattttgat
gatgccatttctattgaacaaacaaaagagggaaattttctcttaaaagttcatattgca
gacgtagcccattatgtaaaacaggattcggcaattgatattgaagcccaaaaaagggga
acttcaatttatttgcctcacatggtaattcctatgctacccgaagaattatcaaacgga
atttgctctttgatgcctagtgtcgacagatttactatcacaatggaatctcttataaat
aaaaagggtgaaaatttatacattaaaatttacccttctataattaattcaaaatggcgt
ctaacttatgaaaaagtaaataatttttttgctggttccttttcatttggtgacacagat
ttagaaaatatgttaaaaaagtgtttaaatttaaacactattttgtcaaatttcaagaaa
aaacaagggtatattgaccttgcgcttgatgaaattaaaattattttagaccaagaagga
tatacacaatccctaaaactaaaacgaagaggaatttctgaagaattaattgaaaatttc
atgattagggcaaatgaaaatgtttcggaatttttaaccaagaaaaaaattccgatttta
tacaggattcatgcaaaccctgatcctgaaaagataacaatttttaatcaagttattaaa
tctttaggcatacaacacagcttaaaattaaatcctagttctaaagaatttgcacataaa
attaatcaaataaaattagaaaataacgacaattttcttaaatattcaattttaagaact
atgcaaaaagcaatttatagcactgaaaacgaaggacattttggtcttgcagctagtttt
tatagtcattttactagccctatccgtcgttatcctgatttattattgcatagaattatt
cgcaactttttgttccaaaaaaatgatgacattgaaacttataaggagattttggaaaaa
aattcctataccacaaccgaattagaacaaaaagcatttaatttagagagaaaaattgta
aatataaaaaaagctgagtatgtccaaaatttgattggaaaatcctttagagcacaaata
acttctattattaaatccggatttttcgttgaaattgacggaatgtttgatgccttaata
gtaaataaaactcttcctgatagcgaaaatgatccttatgtattagcggaggataatttt
tgtttatataataaaaagcatagatttaaattaggcgaatttatcgatgttaaaattgaa
agcgccaatatttgagacggaaaaattagtgctattttaaccaattattag
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