Malania oleifera: 131144250
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Entry
131144250 CDS
T09312
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mof
Malania oleifera
Pathway
mof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131144250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mof03019
]
131144250
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131144250
mRNA degradation factors
5'-3' decay
Decapping complex
131144250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
131144250
NCBI-ProteinID:
XP_057948760
LinkDB
All DBs
Position
12:11390512..11423612
Genome browser
AA seq
831 aa
AA seq
DB search
MDGFDGGSCIQESPSTKPHDLKQFAENSTGDAVFDASQYAFFGKDVVEEVELGGLEEEED
NFPAVEFDDGDFMLDREEGEVLDTFSDIDDLANTFIKLNKVVNEPRSAGVIRDWGSRESS
SAAEWAQEADFPNWFDQHICDNEGIQDGKRWSSQPHSSSACLSDSKPLHRTSSYPEQQPQ
PHFSSEPILVPKSSFTSYPPPGGRSQQASPNHHSQNMNVPYLPGGPQIALPSPNPSPFSN
SQLQLPGLPHGSHFGANMPPFTPAISVNNRPPNHWHNQTGLFPGDHPSLLNNLLQQQSPH
QNGLMPPQLMPQQQLRQHRVHHQVQTSFGHLSGMQSHLFNPHISPAPPIMSKYDSMLDLA
HLRDQRPKLSQKNRQYLRFSPQGSDTSSQKSDGGWPQFRSKYMTADEIENILRMQLAATH
SNDPYIDDYYHQGCLAKKSADARLRHHFCPTHLRDLPPRARANAEPHAFLQVDALGRVPF
SSIRRPRPLLEVDPPNSSVASCTEPKVSEKPLEQEPLLAARVTIEDGLCLLLDVDDIDRF
LQFNQLQDGGAQLRGRRQVLLEGLAASLQLVDPLSKNTHTVGLVPKDDIVFLRLVSLPKG
RKLLSRYLQLIFQGSELIRIVCMAIFRHLRFLFGGLPSDPGAAETTSSLAKVVSECVSDM
DLGALSACLAAVVCSSEQPPLRPLGSSAGDGASVILKSVLERATKLLTSPRSVSSCNVPN
RSLWEASFDEFFGLLTKYCFNKYDSIMQSLLAQAPQNMAVGSDAARAISREMPVELLRAS
LPHTNEHQRKLLLDFAHRSMPVGGFNGQGGENGGHSRGSGGYDFLKGNRDL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggatgggtttgatggtgggagttgtattcaagagagtcccagtacgaagccccacgat
cttaagcagtttgccgagaactccacaggagatgcagtatttgatgcatcacaatatgca
ttttttggtaaagatgtagttgaggaagttgagttggggggattagaagaggaagaggat
aactttcctgctgtagaatttgatgatggggattttatgttggatagagaagagggtgaa
gttttagataccttttcagatattgatgatcttgctaatacttttataaagttgaacaag
gttgttaatgaaccaagaagtgctggggttatccgtgattggggatcaagggaaagttca
tctgcagctgaatgggcacaagaggcagattttcccaactggtttgatcagcatatatgt
gataatgaaggtattcaggatggtaaaagatggtcatcacagccacattcctcttctgct
tgtctttccgattcaaagcctctgcacagaacatcttcataccctgagcagcagccacaa
ccacacttctccagtgaaccaattctagtgccaaaatcttcttttacttcatatcctccc
ccaggtggcagatcacagcaggcttcaccaaaccaccattcacaaaacatgaatgttcca
tatcttcctggtgggccccaaatagctctgccttctccaaacccttctcccttctctaac
tcgcagcttcaattgcctggcttacctcatgggtcccattttggtgcaaatatgcctcca
tttactcctgctatctctgttaataaccgaccaccaaatcattggcataaccagactggt
ttgtttcctggagatcatccctctctcctgaacaatttactgcaacaacagtcacctcat
caaaatgggttgatgccaccacagttaatgccacagcagcagttgcggcagcatagagta
catcatcaagttcagacatcatttggtcatctatcagggatgcaatcccacctatttaat
ccccatatttctccagccccacccataatgagtaagtatgattcaatgcttgatctggcc
catctaagagatcagagacctaaattgtcacaaaaaaataggcagtatcttcgtttttct
ccacagggctctgataccagtagccagaagagtgatggtgggtggccacaatttagatcc
aagtatatgacagctgacgaaattgagaatatccttagaatgcagcttgctgcaacacac
agtaacgatccatacatagatgattattaccaccagggctgtcttgcaaaaaaatctgca
gacgcaaggttgagacaccatttctgcccaactcacttgagggatcttcctccacgagcc
cgtgctaatgctgagcctcatgcttttctccaggttgatgcccttgggagggttccattt
tcctcaattcgaaggcctcgccctcttcttgaggttgaccctccaaattcatccgttgcc
agctgtactgagccaaaagtttcagagaaacccctggaacaggagccattgcttgcagca
agggtcaccattgaggatggtctttgtctcctccttgacgtagatgatattgaccggttc
ctgcaattcaatcagctccaagatggtggtgcacagctgagggggcggcggcaggtcctg
cttgaagggctggcagcttcgcttcaacttgttgacccactaagcaaaaacactcacaca
gttgggttggttcccaaggatgatattgtattcttgagattagtctctcttcccaagggc
aggaagctcctctcaaggtacctccagctcatttttcaaggcagcgagcttatccgaata
gtctgcatggccatatttcgtcatttaaggttcttgtttggtggccttccatctgatcca
ggagcagctgaaacaacttcgagtcttgcaaaggttgtttctgaatgtgttagtgacatg
gatcttggtgcgctaagtgcttgtcttgcagcagttgtttgttcgtccgagcaacctcct
ctccgaccacttggaagctctgctggagatggggcttccgttattttaaaatctgttcta
gagagggcaactaaactcttaaccagtcctcgctctgtgagcagctgcaacgtgcctaat
cgttctctgtgggaggcctcatttgatgaattctttggccttctcaccaagtactgcttc
aataagtatgatagtattatgcagtcgctacttgcgcaggccccacaaaatatggctgtt
gggtcagatgcagcaagagccattagtagggaaatgcctgttgagcttttacgtgccagt
cttcctcacaccaatgagcatcagagaaagcttttattggacttcgcacatcgctccatg
cctgtaggtgggtttaatggacagggtggtgaaaatgggggtcatagtaggggtagtggt
ggttatgactttttgaaagggaaccgggacttgtga
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