Malania oleifera: 131144718
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Entry
131144718 CDS
T09312
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mof
Malania oleifera
Pathway
mof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131144718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mof03041
]
131144718
Enzymes [BR:
mof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131144718
Spliceosome [BR:
mof03041
]
Complex C
Other components
Step II factors
131144718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
cobW
ABC_tran
nSTAND3
AAA_30
AAA_23
AAA_16
ATPase_2
Helicase_RecD
AAA_29
SLFN-g3_helicase
SRP54
NB-ARC
MMR_HSR1
DAP3
T2SSE
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
131144718
NCBI-ProteinID:
XP_057949536
LinkDB
All DBs
Position
12:complement(82519846..82558414)
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AA seq
700 aa
AA seq
DB search
MAKLPIIQFEDKIIETVERNPVVVIIGETGSGKSTQLSQILHRKGYTKSGVIGVTQPRRV
AAVSVARRVGQELGVRLGEEVGYAIRFEDRTSEKTRIKYLTDGVLLRESLSNPELDQYSV
IILDEAHERSLNTDILMGLMKRIIKMRASNLKVIITSATLDGDKVSRFFSNCPVVSVPGK
LFPVEIFYSTERPTSYLESSLKTALDIHAREPEGDVLIFMTGQDDIEKLVSKLEERIQSL
EEGSCMDAIILPLHGSLPPEMQVRVFTPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNASTGMYSLDVVQISRVQANQRAGRAGRTCPGKCYRLYPSMVYRGEFLDVTVPE
IQRSSLAGSVLYLKSLDLSDIDILKFDFLDPPSSEALEDALKQLYLIDAIDENGLITSVG
RTMAELPLEPSLSRTLIEANEYGCLSQALTIVAMLSAETALLPGRSKGTEKKRKHASLDL
PDGSGWGDHIQFLQIYEHWDQTDYNPNWCKDNDLQVRGMMFVKDVRKQLCQIMQKIARGS
LDVQADERRKERLRDYKNLRKALCVGYGTQLAERMFHHNGYRTLGFKPQLVQVHPSSVLR
PDEEGMLPNYVVYHELIATSRPFMRSVCAVEMPWVMPILKKIQKLNIHKLSGGSNCSEER
AQGEPLDLPKKEVEVAASCDERDSKIQAARDRFLARKGKR
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacttccgattatccagttcgaggacaagataatcgaaaccgtggagcgtaat
ccggtggtagtgatcatcggagagaccggctccggtaagagcactcagctctctcagata
cttcacagaaaaggctacaccaagtccggcgtcatcggcgtcactcagcctcgacgagta
gctgcagtctccgtcgccagacgggttgggcaggagcttggtgtacgacttggggaggaa
gtgggctatgccattcgatttgaagatagaacttcagagaaaacacgtattaaatatttg
actgatggagtcctccttcgtgaaagtctttctaaccccgagcttgatcagtattcagta
attatattggatgaagctcatgagagaagtctaaacacggatatattgatggggctgatg
aaacgcataattaaaatgcgtgcctccaatttgaaggttattatcacttcagccactctc
gatggtgacaaggtgtccagattcttctccaattgtcctgttgttagtgtaccagggaag
ttattccctgtggaaatattttacagcactgaacggccaacaagttatcttgagtcttct
ttgaaaacagctctagatatacatgctcgggagcctgaaggtgatgtcttaatattcatg
actggacaggatgatattgagaagttggtatcgaagttggaggagagaattcaaagctta
gaggaagggtcttgcatggatgcaattatccttccccttcatggctccttgccaccagaa
atgcaggtacgtgtattcactcctccacctccaaactgtaggcgtataattgttgctaca
aacattgctgagacttctttgactgttgatggtgttgtgtatgttattgattctggttat
gtgaagcaacggcagtacaatgcgtctactggcatgtattctcttgatgttgttcaaatt
agcagagtgcaagccaatcaacgtgcaggacgagctggaagaacatgtcctggaaagtgt
taccgactatacccatccatggtctaccgtggtgaatttttggatgtaacggttcctgaa
atacagagatcttctcttgctggcagcgttttatatttgaaatcattggacctctctgat
attgatattctcaaatttgattttcttgatcctccttcctcagaggctttggaagatgct
ttaaagcagttgtatctcattgatgccattgatgaaaatggactaataacgagcgtcgga
aggacaatggcagagcttccattggaaccttctctctctaggaccttgattgaggcaaac
gagtatggttgcttatcccaggcattgaccattgttgctatgttatctgcagaaactgcg
ctgcttcctggacgaagcaagggcactgaaaagaagagaaaacatgcttccttggacctt
cctgatggttctggctggggtgatcacatccaattcctacagatatatgagcattgggat
caaactgactataaccctaattggtgcaaagataatgatttgcaggtgcgagggatgatg
tttgtcaaagatgtccggaaacagttgtgccagataatgcagaaaatagcaagaggatcg
ttagatgtacaagcagatgaaagacggaaagaaagattgcgggattataagaatttaagg
aaggctttgtgtgtaggctatggaacccagcttgctgaacgaatgtttcatcataatggc
tatagaactctaggcttcaagccacaacttgttcaggtacatccgtcttcagtgctgaga
ccagatgaggagggaatgctcccaaattatgttgtgtatcatgagctcattgccacctcg
cgtccattcatgcgcagtgtttgtgcagtagagatgccatgggtcatgcctatcttgaag
aagatacagaagctaaatattcacaaactaagtggtgggtccaattgttcagaggagaga
gcccagggagaaccattggacttgccgaagaaagaggttgaagttgctgcgtcttgtgac
gaacgtgacagtaaaatacaggctgctcgggaccgttttcttgctcgcaaaggaaagaga
tag
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