Malania oleifera: 131146582
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Entry
131146582 CDS
T09312
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mof
Malania oleifera
Pathway
mof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131146582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mof03041
]
131146582
Enzymes [BR:
mof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131146582
Spliceosome [BR:
mof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131146582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
AAA_30
T2SSE
nSTAND3
PWI
ABC_tran
Cas3-like_C_2
AAA_16
SRP54
Motif
Other DBs
NCBI-GeneID:
131146582
NCBI-ProteinID:
XP_057952240
LinkDB
All DBs
Position
13:complement(62525865..62585380)
Genome browser
AA seq
1075 aa
AA seq
DB search
MGSESNLKIWVSDKLMSLLGYSQPTVVQYIIGLSKQASSPVDVLGKLEDFGLPISSETRT
FAEEIFAKVPRKAPGLNLYQKQEREAAMLARKQKSYALLDADDDDDDDDDDLGAGVDDKS
SASVVSLSKTADNHKKRFRKKIDDNQEDEDDEVSAPAEKGKRLKRQRLQDDNDDSSESEE
ERLRDQREKEQLEKNMRERDAAGTRKLTEPKLTRKEEEEAVRRSNVLEQNDILDLRKVSR
QEYLKKREQKKLEEIRDDIEDEHYLFDGVKLTEAEYRELRYKKEIYELVKKQTEETDNTS
EYRMPEAYDDEGGVNQDKRFAVALQRYRDLSSGDKMNPFAEQEAWEDHQIGKATLKYGSK
NKKQISDDYQFVFEDQIEFIKASVMDGDELEDEPHTESLDNLMAKSALEKLQEERKTLPI
YRYRDELLQAIHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVA
ARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLAGYSVVMVDEA
HERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIH
YTRAPEADYLDAAIVTALQIHVTQSPGDVLVFLTGQEEIEAAEEILKHRTRGLGTKIAEL
IICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNP
RTGMESLLITPISRASAMQRAGRSGRTGPGKCFRLYTAFSYYNEMEDNTVPEIQRTNLAN
VVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDP
MLSKMIVASDKYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIAL
LKVYSSWKETNFSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELLSNPNDLEAIKK
AITSGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQV
TELKPDWLVEIAPHYYQMKDVEECMLSLSLCLSLSLYARMYRGDCKASLHKETLL
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgagagcaatttgaaaatatgggtctcagacaagttgatgtcgcttttggga
tattcacagccaacagtagtgcagtatattattggattatctaagcaagcatcgtcgcct
gttgatgttcttggtaagctagaagattttgggttgccaatctccagtgaaacacgcact
tttgcggaagaaatttttgccaaagtaccgcgcaaagctcctgggttaaacctttaccag
aaacaggaaagggaagcagctatgctggcaaggaagcagaagagctatgctcttttggat
gctgatgatgatgatgatgatgatgacgatgatcttggtgctggcgtggacgataaatct
tctgcttctgttgtgtccctttcgaaaacagcagacaaccataagaaacggttcaggaag
aagattgatgataatcaagaagacgaagatgacgaggtgagtgctcctgcagaaaaagga
aaacgacttaaaagacaaagactgcaggatgacaatgacgactcctccgagtcagaagaa
gaaaggttacgtgaccagagagagaaggagcagttagagaagaatatgagagagcgggat
gcagcagggacacggaagttaacggagccaaagttaacgcgaaaggaggaagaagaggca
gttcgaagatctaatgttttggaacaaaatgatattctagatttaagaaaagtttcaaga
caagaatatttgaagaaaagggagcaaaagaaactggaggagatcagagatgatatcgag
gatgaacattatctgtttgatggtgttaagctaactgaagcagaatatcgtgagctaaga
tacaagaaggaaatatatgagcttgtgaagaagcagacagaagagactgataacacaagt
gagtacaggatgcctgaagcttatgatgatgaagggggtgtaaaccaggataagagattt
gctgtagctctgcagcgttacagggatctaagttctggtgataaaatgaatccatttgca
gaacaagaggcttgggaagaccaccaaatcggaaaggctaccctgaaatatggttcaaaa
aataaaaagcaaatatctgatgactatcagtttgtgtttgaggaccagattgagtttatc
aaagcatctgtgatggatggggatgagcttgaggatgagccacatactgagtctcttgac
aacttgatggcaaaatcagctttagagaagcttcaggaagagaggaaaaccctacctata
tatcgatatcgagatgaattacttcaagccattcatgatcatcaggttcttgttattgtt
ggagagactggttctggaaagactacacagatacctcaatatcttcatgaagctggatac
acaaaacgtggaaaggttggatgtacccagccacggagggttgcagctatgagtgttgct
gcccgagtttctcaggaaatgggtgttaaacttgggcatgaggttggctactctattcgt
tttgaagactgcacatcagaaaagacagtactcaaatatatgactgatggaatgttgttg
cgggaattccttggtgaacctgatttggcaggctacagtgtggttatggtggatgaggcc
catgaaagaacactctcgaccgatattctctttggcttagtaaaggatattgctcgattt
cggcctgatcttaagttgcttatttcaagtgctactctagatgcagagaagttcagtgat
tattttgattctgctccaatttttaaaattcctgggaggaggttccctgttgaaatacac
tacacaagagcaccagaggctgactacttggacgcagcaattgttacagcactgcagatc
catgttacccagtctccaggggatgttttggtgttcctcactggtcaggaggaaattgaa
gcagctgaggagattctgaaacacaggaccaggggcttgggtacaaaaattgctgagcta
ataatttgccctatttatgcaaatcttccaactgaactacaagctaaaatttttgaacct
actcctgaaggggcacgtaaagttgtgttggccacaaatatagcagaaacatcattgaca
attgatgggatcaagtatgtcattgacccaggattttgcaagatgaaatcttacaatcca
cgaactgggatggagtcattactaatcactcctatatctagagcatcggcaatgcaaagg
gctggtcgttctggacgaacaggtcctgggaaatgcttccgattgtatactgccttcagc
tattataatgaaatggaggataatacggtgcctgaaatacagcggactaaccttgcgaat
gttgtgctcactttgaagagccttggcattcacgacttgttgaattttgattttatggat
ccaccaccggctgaagctttactgaaagcactggaactgctttttgctttaagcgcatta
aataagctaggtgagttgactaaggtgggtagaaggatggcagagtttcctcttgatcca
atgctttcaaagatgatagttgcttccgacaagtataagtgttcagatgatataatttcg
attgctgctatgctgtctgttggaaattcaatcttttatcggccaaaggacaaacaagtt
catgctgacaatgcacggatgaattttcacactggaaatgttggagaccatattgcgctg
cttaaggtgtacagttcgtggaaagaaacgaacttctcaactcagtggtgctatgaaaat
tatattcaggtcaggagtatgaaacgtgccagagatgtaagagaccagttggaaggtctc
ttggagagggttgaaattgaactgctgtccaatcccaatgatctagaagcaataaagaag
gccataacatcagggtttttccctcattctgcaaggctgcaaaaaaacggatcgtaccga
actgttaaacatcctcagaccgtccacattcaccccagctcaggtttagcacaggtgctt
ccacgatgggttgtataccatgagttggttcttacaaccaaggagtacatgaggcaggtc
actgaactaaagccagactggttggtggaaatagctcctcattattatcagatgaaggat
gttgaagagtgtatgctctctctctctctctgtctctctctctctctctatgcacgcatg
tacaggggtgattgcaaagcatctctacataaagaaactctattgtag
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