Malania oleifera: 131149123
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Entry
131149123 CDS
T09312
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mof
Malania oleifera
Pathway
mof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131149123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mof03019
]
131149123
03041 Spliceosome [BR:
mof03041
]
131149123
03009 Ribosome biogenesis [BR:
mof03009
]
131149123
03016 Transfer RNA biogenesis [BR:
mof03016
]
131149123
Enzymes [BR:
mof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131149123
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131149123
Spliceosome [BR:
mof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131149123
Complex C
U4/U6.U5 tri-SnRNP related factors
131149123
Ribosome biogenesis [BR:
mof03009
]
Eukaryotic type
Pre-60S particles
Helicases
131149123
Transfer RNA biogenesis [BR:
mof03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131149123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
131149123
NCBI-ProteinID:
XP_057955217
LinkDB
All DBs
Position
2:complement(88467935..88524894)
Genome browser
AA seq
1030 aa
AA seq
DB search
MEKPLTPGKRKLSESAEGKEAPKQESVSKRRNLARTCIHEVAVPSEYISSKDESTHGTLS
NPVYNGKMAKSYPFNLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR
VIYTSPLKALSNQKYRDLSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQPC
HVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFMKLQDTFTKQKISDGNRANGK
PSGRIAKGGMASGGSDIYKIVKMIMERKFEPVIIFSFSRRECEQHAMSMSKLDFNTKEEK
DVVEEVFQNAVRCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVK
ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDERGICII
MIDEQMEMNTLNDMVLGKPAPLVSTFRLSYYSLLNLMARAEGQFTAEHVIRNSFHQFQYE
KALPDIGKKVSNLEQEAAMLDASGEAVVAEYHKLRLEIAQLEKKMMLEITRPERVLYFLL
PGRLVKVREGGTDWGWGVVVNVVKKPAVGLGTLPSRGGGYIVDTLLHCSPNSNENGARPK
PCPPRPGEKGEMHVVPVQLSLISALSKLRISIPSDLRPLEARQSILLAIQELGNRFPQGL
PKLNPVKDMGIEDPEFVELVSQIEELEQILLAHPVHKSQDEHQMRCFQRKAEVNHEIQQL
KSKMRDSQLQKFRDELKNRSRVLRKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNG
TFNDLDHHQIAALASCFIPGDRSSEQIHLRTELAKPLQQLQDSARRIAQIQLECKLDINV
DEYVESTARPYLMDVIYCWSRGATFSEVIQMTDIFEGSIIRLARRLDEFLNQLRAAAHAV
GEADLDSKFAAASGSLRRDDWNGWRAMCKLNSAPILINFSSHPGTTVHCEVLTVTLDSLG
MVPSFASSRL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcctctgacaccagggaaacggaaactatctgaaagtgcagaaggcaaagaa
gcccctaagcaagaatctgtgtctaagcgccgtaatttggcacgcacatgcatccatgaa
gttgcagttcctagcgagtacatttcatccaaagatgaatcgactcatgggacactttcg
aatcctgtgtataatggtaagatggcaaagagctatccatttaacctggacccatttcag
caagtgtccgtggcatgcttggaaagaaatgagtcagttttggtttctgcacatacatcg
gctggtaaaactgcagttgcggaatatgcgattgcaatggcttttagagacaagcaaagg
gtcatttatacgtcaccactaaaagctttaagcaatcaaaagtatagagacctaagccaa
gagttctcagatgttgggttgatgacaggtgatgttacgctctcgcctaatgctagttgc
ttggtgatgacgacagagattctaaggggaatgctttatcgaggttctgaggttttgaag
gaagttgcttgggttatctttgatgaaatacattacatgaaggatcgagaaagaggagtt
gtttgggaagagagtattattttcttacctccagcgattaagatggttttcctttctgca
actatgtcgaatgccacagaatttgcagaatggatttgtaatttgcacaaacagccttgt
catgtggtgtacacagattttcgacccactcctctgcagcattatgtgtttcccatgggt
gggtcggggttatatcttgttgtggatgagaatgagcagttcagggaggataatttcatg
aagctgcaggatacattcacgaaacagaaaataagtgatgggaatagggcaaatggcaag
cctagtggtaggattgctaaaggtgggatggcttcagggggctctgacatttacaaaatt
gtgaagatgattatggaacggaagtttgaaccagtcatcatttttagtttcagtagaaga
gagtgtgaacaacatgcaatgtctatgtccaagcttgattttaataccaaagaagagaag
gatgtcgtggaggaggttttccaaaatgcagtacgttgcttaagtgaggaagacagaaat
ttacctgctattgagttgatgctgccactactgcagcgaggcattgctgttcatcattct
ggccttcttccaattattaaagaattggtggagcttctcttccaagaaggtcttgtaaag
gccctttttgccacagagacatttgccatgggattaaacatgcctgcaaaaactgttgtt
ttcacagctgttaagaagtgggacggtgacagccataggtttattggatctggtgagtat
atccagatgagtggaagagctgggcgtcgtggcaaagatgagcgtggcatttgtatcata
atgattgatgagcagatggagatgaatacgctgaatgacatggttttgggaaaaccagct
cctttagtcagtactttcaggctgagctactactcacttttaaacctaatggcccgtgct
gaaggccaatttacagctgagcatgttatcagaaattcattccatcaatttcaatatgag
aaggctttacctgatatagggaaaaaggtctcaaatcttgaacaggaagctgccatgctt
gatgcttcaggagaggctgtagttgctgaatatcataagctaaggcttgaaatagcccag
cttgagaaaaagatgatgttagaaataacaaggcctgaaagagttctttattttcttctt
cctggtaggctggttaaggtaagggaaggtggaacagattggggttggggagttgttgtg
aatgttgtgaaaaagccggcagtagggttaggcacgttgccttcacgtggtggtggctat
atagtggatacattacttcattgctctcctaattcaaatgaaaatggtgcgcggccaaaa
ccttgtccgccccgtcctggagaaaagggcgaaatgcatgtggtccctgttcaactgtcc
ctaatttctgcccttagtaagctcagaatatccattccttccgaccttcggccattggaa
gcaaggcaaagtatattgcttgcgatacaggagctaggaaatcgttttccccaaggtctt
ccaaagcttaatcctgtaaaggacatgggtattgaagatccagagttcgttgagttggtt
agtcaaattgaggaattagagcagatattattggctcatccagtgcacaagtcacaagat
gaacatcagatgagatgtttccagaggaaagcggaggtgaatcatgaaattcaacagctt
aagtcaaaaatgcgagattcccagcttcaaaaattccgcgatgaacttaagaaccgttca
cgagttttgagaaagcttggccatattgatgctgatggtgttgtccagttgaaggggcgg
gcggcttgcttaatagacactggagatgaacttcttgttactgaattgatgttcaatggt
acatttaacgatcttgatcatcaccaaattgcggctctggcaagttgcttcattccagga
gacagatcaagtgagcaaatacatttgagaactgagcttgctaaaccattacaacagctc
caagacagtgcaagaagaatagcacagatacaacttgaatgtaaattggatataaatgtg
gatgagtacgtggaatcaacagcgagaccatatttgatggatgtgatttactgttggtca
aggggggcgactttctcagaggttatacaaatgactgatatatttgagggtagtattatc
aggcttgctagaaggctcgatgagtttttgaaccagttgcgtgctgctgctcatgctgtt
ggagaagctgatttggacagtaaatttgcagcagccagtggaagtcttcgcagagatgac
tggaatggttggcgtgcgatgtgcaagctgaactccgcgcccattctcatcaatttttcc
tcccaccccggtacaaccgtgcactgtgaggtattgacagtcacccttgattctttagga
atggtaccaagctttgcttcttcaaggttgtga
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integrated database retrieval system
