Malania oleifera: 131154014
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Entry
131154014 CDS
T09312
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mof
Malania oleifera
Pathway
mof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131154014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mof03021
]
131154014
03019 Messenger RNA biogenesis [BR:
mof03019
]
131154014
Transcription machinery [BR:
mof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131154014
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131154014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
131154014
NCBI-ProteinID:
XP_057962449
LinkDB
All DBs
Position
4:9341018..9350324
Genome browser
AA seq
1055 aa
AA seq
DB search
MDEARFVLPSRENPRTLGFASPSSYNSADSTSNKAMSNDFVQKPLPTILERFRGLLKDRE
EGMKISDDDYVPPPGTDEIVRLYELVLSELTFNSKPLITDLTIIAGEQREHGEGIADAIC
ARIIEVPGEQKLPSLYLLDSIVKNIGREYVRHFSTRLPEVFCEAYRQVNPNLHPAMRHLF
GTWSAVFPQSTLRKIEAKLQFSPAVNHQSSGITSLKASESPRPAHGIHVNPKYLEARRQF
EQSPADSSIQHPKGTSKLKVYAQKPAIGYDYDSDRVEVTSSLVGVQQSNSTGGTGRTSFA
LGADKPFPSSSARIARPSPSRIGISGSLSPRVDELPVGNSPRGVVEGVSPSHPGYDFGLG
RIMGRDEESKEWRRRHWSDDTRHRFETSAFNHSNGRELQGPRALIDAYGNDRRERILNDK
PLKVQRLEVNGISSKVPMRTWQNTEEEEYDWEDMSPTLADRSRSNDLPSSSVPDLVNFRT
RPGLGALGAAPLELDFRRRNWSSHAQLPSVDNSLKFDEGSVSNVGSSRGSVSRSSGFQNE
RNQIQGSRYPQEAWNMLHNGPRLSQHSLNSERRGFQIPVSASGISSVAGEKMPVGADNFA
DSDAELHTLSTFASRTGSSSLNSMNLETHSAVVPSSTGIWPPVNVHKSYPPPMLPVFPQQ
KQIRSRSDLMNSTSTVVNHGPEKYVFLPDQRLVSVENKALSSTKLPPLPNRQAGLIPFSQ
PNPHVSNLQPQVILSQESQENFVSTVAASVPSHLGSSPMIHGYTSQGPGVATSAALLNQL
HHVRSSVPFQNIPNSSLHLQGGTLPPLPPGPPPASSPMVPLSQGPIINSQPPGGAFSGLI
SSLVAQGLISLTAQAPTQDSVGVEFNPDILKIRHESAIKALYADLPRQCTTCGLRFKCQE
EHSSHMDWHVTKNRISKNRKQKPSRKWFVSASMWLSGAETLGTDAVPGFLPAETVMEKKD
DEEMAVPADEDQNVCALCGEPFDDFYCDETDEWMYKGAIYMNAPSGITAGMDRSQLGPIV
HAKCRSESSAVSPEDFVQDERGSTEEGSQRKQMRD
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagcgaggttcgtgttgccgtcgagagaaaaccctagaaccctggggttcgcg
tctcccagtagttacaacagcgccgactccactagcaacaaggccatgtccaatgacttt
gtgcagaagcctctccccacgattcttgagcgctttaggggtttgttgaaggatagggaa
gagggcatgaagatttccgacgatgactacgtcccgccgcctggtacagacgaaattgtg
cggctctatgaactcgtattgtctgaacttacgttcaattccaagccccttatcacggat
ctcacgatcatcgccggtgagcagagggagcacggcgagggcattgcggacgcaatttgt
gctcggattattgaggtcccaggtgagcagaaactgccttctttatatttattggacagt
attgtcaaaaacattggccgggaatatgttaggcacttctctacccgtctgcccgaggtt
ttctgtgaggcatatagacaagttaatcctaacttacaccctgctatgcgccacctcttt
ggcacctggtcagccgtgtttcctcaatccactcttcgcaagattgaagctaaactgcag
ttttctccagcagtaaaccatcaatcatctggcattacatctttgaaggcatctgaatct
cctcgaccagctcatggcatacatgtgaatccaaaatacttggaagcaagacgtcagttt
gagcagtctcctgctgatagtagcattcagcatccaaaaggaacttcaaaattaaaggtt
tatgcacagaaacctgccattggatatgattatgactctgatcgtgtagaggttacatcc
tcactggttggtgtccaacaatcgaactcaacaggaggtactggccggacatcttttgcc
cttggggctgataagccatttccatcttcatctgctagaattgcaagaccctctccttca
agaattgggatttctgggtctttatcacctcgggttgatgaattacctgtaggtaattct
ccgagaggagttgttgaaggagtttctccatcccatcctgggtatgatttcggacttggc
agaataatgggcagagatgaagagtcaaaggaatggcggagaagacactggtctgatgat
actcgtcatcgatttgaaacttctgctttcaaccatagcaatggacgtgagctccaagga
cctagagctttaatagatgcttatggaaatgacagaagggaaagaattttgaatgataag
cctctgaaggttcaacggctggaggtgaatggcataagcagtaaggtgccgatgagaacc
tggcaaaatactgaagaggaagagtatgactgggaagatatgagcccaaccctagcagat
cggagtaggagtaatgatcttccctcatcctctgttccagatcttgtaaattttaggaca
agacctggcttaggagcgcttggtgctgcacccttggaattggatttcaggaggaggaat
tggtctagtcatgctcagctgccatcagtggataattctttaaaatttgatgaaggttca
gtttccaatgtggggtctagccgtggttcagtgagcaggtcatctggattccaaaatgaa
agaaatcagatccaaggttctcgctatccccaggaagcctggaatatgctgcacaatggc
cctcggttgtcacaacatagccttaattctgaaagaagaggattccagatacctgtttca
gcaagtggaatatcttcagtagctggtgagaaaatgcctgtgggtgctgataattttgca
gattctgatgcagaacttcatacactgtcaacctttgcatcaagaacgggttcttcaagt
ctcaactctatgaatctggagactcattctgctgttgtaccatcatcaacgggcatatgg
cctcctgtaaatgtgcataaatcttacccaccccccatgttacccgtttttccacagcag
aagcagattaggagtcgttctgatttgatgaattctaccagcacagttgtgaatcatggt
ccagaaaagtatgtgtttttgcctgatcaacggttggttagtgtagagaataaggccctg
agttcaaccaaattgccccctttgcctaaccggcaagctggattgattccttttagtcag
cccaacccgcatgttagtaatttgcaaccgcaagttatcctctctcaggagtctcaagaa
aattttgtttcaactgttgcagcttcggtaccatctcatttagggtcatcacctatgatt
catggatatacctctcaagggcctggtgtggctacaagtgctgctttgttgaaccaactg
catcatgtccgttcttcagtaccattccagaatataccaaacagctctttacatttacaa
gggggaaccttgccccctctgcccccaggtccccctcctgcctcatctccaatggtacct
ttgtctcagggtcccatcatcaatagtcaacctcccggtggtgcattttcaggtctgatt
agttctcttgtggcccaggggttgatctcattaacagcacaagcccctacacaggattct
gttggagttgagtttaaccctgatattcttaagattcgtcatgaatctgcaataaaggct
ctatatgctgatctaccaaggcaatgcacaacgtgtggccttcgattcaagtgtcaagag
gagcacagtagtcatatggattggcatgtgaccaagaatcgcatatccaagaaccgtaag
caaaaaccttctcgtaagtggtttgttagtgccagcatgtggctaagtggtgcagagaca
ttgggaactgatgctgtacctgggtttttgcctgctgagactgtaatggaaaaaaaggat
gatgaggaaatggctgtccctgctgatgaggatcagaatgtttgtgcgttgtgtggggag
ccttttgatgatttttattgtgatgagactgatgaatggatgtataaaggtgctatctac
atgaatgcacccagtggaataactgcaggcatggataggtctcagttaggtccaatagtg
catgctaaatgcaggtccgagtccagtgcagtttcccctgaagattttgtgcaggatgaa
aggggaagtactgaagagggtagtcaaagaaagcagatgcgggattag
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integrated database retrieval system
