Malania oleifera: 131156331
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Entry
131156331 CDS
T09312
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mof
Malania oleifera
Pathway
mof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131156331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mof03019
]
131156331
Enzymes [BR:
mof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131156331
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131156331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
131156331
NCBI-ProteinID:
XP_057965909
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All DBs
Position
5:65058792..65124862
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AA seq
617 aa
AA seq
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MTPMLQKRFFCTELSKTHRLKWNIKQVTKSNFIETLEEIKTHISDSDYIAVSLQKTGSFS
APWHRVLPFDAADSAYCKAKHAAERFQVLQFAVCPFSIEAPSKVVAHPYNFHLFPRDELK
LGMPSYSFSCQTSYLTSMAQEGFDFNACIYDGISYLSRAQESAIKHQIGSLIPSSQVIRS
SSSVPSVADAVFMGRIRSRIKYWRNEYKESSKRADEALVVSLRKLVLGSELYGSRPCINI
DVCSEHQVNLVLEILREFSEDLVPLIIPAKGGGTQAIRVVLTSSSEDKDLLQKELQNLEE
EQNKRIRGFREVIDLISASQKPVVSHNSLNDFTFVHSKFLAPLPPNVDEFKHSLHLIFPH
ILDINHLMMDIGPRKKKTNLPAAISYLKRRFFVPIDMEIPQEAGAKEGKIHGHNVLRISH
LFVKLCSILKILHDTAQSDISDPISVLEGYTNIFNPCCTSSQPIDGSIRMWTGDKRKVSS
EDLVFLWGFRAGMSAGALKSLLQGSHDIFSGDFDVRLVDKSCGVVVFWQPGLSRKFLELM
GGEGLCGSLREMVTDGLKAASYETYERVCSLGLWEVDLADSLDKTLADPDCLLDAGSETK
PSAIYWNSDSIINFYDL
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgactccaatgttgcagaaacgtttcttctgcaccgagctatccaagacccaccgccta
aaatggaacataaagcaagtcaccaagtccaacttcattgaaacactcgaagaaatcaag
acccatatctccgattcggactacatcgccgtttccctccagaaaaccggctccttctcg
gcgccgtggcaccgtgtactgccctttgacgccgctgacagcgcctactgcaaagccaaa
cacgcagctgagcgcttccaggtgcttcagtttgctgtgtgtcctttctctattgaggct
ccttcgaaagtggtggcccacccatataactttcatctgtttcctagggatgaactgaaa
ttggggatgccatcttacagtttttcatgtcaaacatcatatttgacgtccatggcccaa
gaaggttttgattttaatgcctgcatatatgatggcatttcttacttatctagagctcaa
gagtctgctattaaacatcaaatagggagtctgatacctagtagtcaagtaatcagatca
tcttcttctgtcccttcagttgctgatgcagtttttatgggaagaatcagatcacggatt
aaatattggagaaatgaatataaagagtcaagcaagagggctgatgaggctttggtggta
tccctgagaaaacttgtcttaggaagtgaactatatggatcgcgaccatgcataaatatt
gatgtttgcagtgaacatcaagtgaaccttgtgcttgagatcctgcgtgagttctctgag
gaccttgtacctttaataatcccagcaaagggtgggggaacccaggcaattcgggttgtt
ttgacaagttctagtgaagacaaggatcttttgcagaaagagcttcagaatcttgaagag
gagcaaaacaagagaattcgtggctttcgagaggtgatcgatttgatttctgcttcccag
aaacctgttgtctcccacaactcccttaatgattttacgtttgttcattcaaaattttta
gctcctctacctcctaatgtcgatgagttcaagcattccttgcacttgatttttccccac
atacttgacatcaaccacttgatgatggatattggccctcggaagaagaagacaaatttg
cctgcagcaatttcctacttgaagagacggttctttgtgcccattgatatggaaattcct
caagaagctggggcaaaagaaggcaagatccatgggcataatgttttgaggattagccat
ttgtttgtgaaactctgctccatactgaagattcttcatgatactgcccaatctgatatc
agtgatccgatttctgtccttgaaggctacacaaacatattcaatccatgttgtacctcg
tcacaaccaattgatgggagtatcagaatgtggactggtgacaaaagaaaagtaagcagt
gaggatttggttttcttgtggggatttagagctgggatgtctgctggagcgctgaagagc
ctactacaagggtcccatgacattttctctggggattttgatgtccgcttggtggataag
agctgtggcgttgtagtcttctggcagcccggtttgtccaggaaatttttggagcttatg
ggtggtgaggggctttgtggatccttgagggagatggtcacagatggtctaaaagcagca
agttatgaaacttacgagagagtctgtagtttgggattatgggaggtcgatttagcagat
tccttggacaaaacccttgcagatcctgactgccttctggatgcaggttctgaaacaaag
ccatcagcgatatactggaacagcgactctataattaacttttatgacctttga
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