| Entry |
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| Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
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| KO |
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| Organism |
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:mof00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131156710
09124 Replication and repair
03420 Nucleotide excision repair
131156710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:mof03021]
131156710
03036 Chromosome and associated proteins [BR:mof03036]
131156710
03400 DNA repair and recombination proteins [BR:mof03400]
131156710
Enzymes [BR:mof01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131156710
Transcription machinery [BR:mof03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131156710
Chromosome and associated proteins [BR:mof03036]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
131156710
DNA repair and recombination proteins [BR:mof03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131156710
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
5:87011479..87024330
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| AA seq |
757 aa
MKIEIEDVTVYFPYDHIYPEQYAYMVELKRTLDAKGHCLLEMPTGTGKTIALLSLITGYA
LSKPSNPVKLIYCTRTVHEMEKTLAELRLLHDYQLRHLGPAARILAIGLSSRKNLCINPS
VVSADNRDSVDAACRKLTASWVRALAVENPNVPNCSFYENYEKAAAEAVLPPGVYTLQDL
RAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNLNKMAQEIDRFKATDAGRLRAEYNRLVEGLALRGDLPI
ADAWLSNPALPDDILKEAVPGNIRRAEHFLAVLRRLVQYLKGRLQTENFEKEGPVTFVAS
INSQAGIDQKMLKFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLSIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVSVVPDGIVCFFV
SYSYMDGIVNSWNETGILKDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSQLRDAHLNLSTDMALHITREF
LRKMAQPYDKADGIGRKTLLSQEDLKKMVEANAHEMF |
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| NT seq |
2274 nt +upstreamnt +downstreamnt
atgaagatcgagatagaggacgtaacagtctacttcccctatgaccacatctacccagaa
cagtacgcttacatggtggagcttaagcgaactctagacgccaagggtcactgccttctc
gaaatgccaacgggcaccggcaagaccatcgccctcctctccctcatcaccggctacgcc
ctttctaaaccctccaaccccgtcaagctcatctactgtacccgcaccgttcacgagatg
gagaagaccctcgccgagctccgcctcctccacgactaccagctccgccacctaggtccc
gccgctcgcatcctcgccattggcctctcctcccgcaagaatttgtgcatcaatccctcc
gtggtctctgctgataatcgggactcagtcgatgctgcctgccgcaagctaactgctagc
tgggtccgtgctctcgccgtcgagaaccccaacgtccctaattgctctttttatgagaat
tatgagaaggcggcagccgaggcagtcttgcccccgggtgtctacaccttgcaggatctg
agggcgtttgggaaagagaaagggtggtgtccttactttttggcacgccatatggtgcag
tttgcaaatgtggtggtttatagttaccagtacttgcttgatcccaaggttgcagggata
atatcaaaggagatgcagcgggagtctgttgttgtgtttgatgaggcacataatattgat
aacgtgtgtattgaagcacttagtgttagtgtcaggaggcaaacacttgaaggtgccact
aggaatcttaataagatggctcaggagattgataggttcaaggccactgatgcaggtaga
ctgcgtgcagaatacaaccgccttgtagaaggtttggcactaagaggagacctacctata
gctgatgcttggctttccaatcctgctttgcctgatgacattctgaaggaggctgtgcca
ggaaatattcgccgagcagagcattttctggctgttttacgtagattggtccaatacctg
aaagggcgtttgcaaactgagaattttgagaaggagggccctgttacctttgttgcttct
ataaattcccaggctggaattgaccagaaaatgttgaagttttgttacgaacgcttgcac
tctctaatgttgacacttgaaataacagacacagatgaatttttgcacatccaaacaatc
tgcgattttgcaacgcttgtggggacatatactcgggggttttcaattattattgaacct
tttgatgagaggatgccgcatattcctgatcctgtgttgcagcttagctgccatgatgct
tctctttccataaagcctgtattcgaacgattccaatcagttgtgatcacctcaggaact
ctcagcccaattgatctctaccctcgtcttcttaatttcaatccagtggttagtcgaagc
tttacaatgtccttgacaagggattgcatatgcccaatggttctcactcgtggaagtgat
cagcttccagtaagtaccaaatttgatatgagaagtgatcctggtgttgtaaggaattat
ggaaggctcttgcttgagatggtgtctgttgtcccagatgggattgtatgtttctttgtc
agctactcatacatggatggaattgtcaatagctggaacgaaactggaattttaaaggac
ataatgcaacataagcttgttttcattgagactcaggatgtggtagaaactacattggcc
cttgacaactatcgcagggcttgtgattgtgggaggggtgctgtctttttctcagttgcc
agaggcaaagtagctgaaggtatagattttgaccgacattatggcagactggtgattatg
tttggtgttcctttccaatacacgttgagcaaaatattgcttgccagattggagtattta
cgtgaaacgttccagataaaggaaggcgattttttgacttttgatgccttgagacaagct
gctcagtgtgttggcagagtgatccgttcaaaggctgattatggaatgatgatctttgca
gacaaaaggtatagccgccatgataaacgatctaaactccctgggtggatactgtctcag
ttacgtgatgcacatctgaatttgagcacggacatggctctgcatataacacgagagttt
ctccggaagatggctcaaccttatgataaggcagatggaattggtaggaaaaccctgttg
tcgcaagaagacttgaagaagatggtggaagccaatgcacatgaaatgttctga |
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