Malania oleifera: 131157209
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Entry
131157209 CDS
T09312
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mof
Malania oleifera
Pathway
mof03013
Nucleocytoplasmic transport
mof03015
mRNA surveillance pathway
mof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131157209
09122 Translation
03013 Nucleocytoplasmic transport
131157209
03015 mRNA surveillance pathway
131157209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mof03019
]
131157209
03041 Spliceosome [BR:
mof03041
]
131157209
Enzymes [BR:
mof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131157209
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131157209
Spliceosome [BR:
mof03041
]
Complex C
Other components
EJC/TREX
131157209
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131157209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
131157209
NCBI-ProteinID:
XP_057967175
LinkDB
All DBs
Position
6:complement(22529453..22543302)
Genome browser
AA seq
427 aa
AA seq
DB search
MGEARENDAYEEELLDYEEEDEKAPDSVSKAAGETVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILAL
ARDKELGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaagcaagggaaaatgatgcttacgaggaagagcttttggactacgaagaagaa
gatgaaaaagcccccgattccgtttccaaagccgccggcgaaaccgtcaagaagggctat
gttggaattcacagttcgggatttagagacttcctgttgaaaccagagctgcttcgtgcc
attgtagattctggatttgaacatccttcagaagttcaacacgagtgcatccctcaagct
atcctaggaatggatgtcatttgtcaagcaaagtctgggatggggaaaactgcagtcttt
gttctgtcaactctgcaacaaattgaacctgttgcaggtcaagttgctgcacttgtgctt
tgccatacaagagaattagcataccagatatgtcatgagtttgagaggtttagtacctat
ctgccagatatcaaggttgctgtcttctatggtggggttaatgttaagattcacaaggat
ctgctgaaaaatgaatgccctcatattgttgttggtacgcccggaagaattttggctctt
gcaagggataaagaactaggattaaagaatgtgagacattttattcttgatgagtgtgac
aagatgcttgaatcacttgacatgaggaaagatgttcaggagatattcaagttgactcct
catgataagcaggttatgatgttttcagcaacactcagcaaagagatacgccctgtttgc
aagaaatttatgcaagatccaatggaaatttatgtggacgatgaggctaagttgacactt
catggccttgtacagcactacatcaaattgagtgagctggagaaaaaccgcaagttgaat
gatctccttgatgcattggacttcaatcaagttgtcatatttgtcaaaagtgtgaacaga
gcagctgagctgaacaagttactagtggaatgcaatttcccttctatttgcatccattct
ggaatgtctcaggaagaaagattgacacgctataagagtttcaaggagggtcataaaaga
atccttgtcgcaacagatttagttggaaggggaattgatattgagcgtgtgaacattgtt
atcaattatgacatgcctgattctgccgacacctacctacacagggtgggcagggctggt
aggtttggcaccaaagggcttgctattacttttgtttcttcggcttctgattctgatgtt
ctgaatcaggttcaggagaggtttgaggtggatataaaggagcttcctgagcaaattgac
acctctacatatatgccatcatga
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