Malania oleifera: 131162133
Help
Entry
131162133 CDS
T09312
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mof
Malania oleifera
Pathway
mof03020
RNA polymerase
mof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131162133
09124 Replication and repair
03420 Nucleotide excision repair
131162133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mof03021
]
131162133
03400 DNA repair and recombination proteins [BR:
mof03400
]
131162133
Enzymes [BR:
mof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131162133
Transcription machinery [BR:
mof03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131162133
DNA repair and recombination proteins [BR:
mof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131162133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
131162133
NCBI-ProteinID:
XP_057974301
LinkDB
All DBs
Position
8:105420838..105431104
Genome browser
AA seq
1855 aa
AA seq
DB search
MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI
DRKTKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK
FKQAQKIRNPKNRLKKILDACKNKTKCDGGDEIESQGQDTEEPIKKSRGGCGAQQPKITI
DGMKMVAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCLLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRQNENLRKQERNGSAAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN
LMRTSAWHSEAETGFVTPGDTQVRIERGELLCGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISRAKNEVKELIRAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKSEFDQVFRYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
GDDLMSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFEENEGFKP
EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDH
LRGVTENIMLGQLAPIGTGDCALYLNDQMLEHAIDVQLPSYMEGLDFGMTPSRSPITGTP
YHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYS
PTSPSYNPSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYS
PSSPYNSGVSPNYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDDDESSR
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggacatgcgatttccttactctccggcggaggtcgccaaagttcgtatggtgcagttc
ggtatactcagccccgacgagattaggcaaatgtcggtggtgcagatcgagcacagcgaa
acaacggagcgagggaagccaaagccagcagggctgagtgaccctcggcttggtaccatc
gataggaagacgaaatgcgaaacttgcatggctaacatggccgagtgccctggtcatttt
gggcaccttgaactagccaagccgatgtttcatattggatttatgaaaactgttctgagc
attatgcgttgtgtttgcttcaattgctccaagatcctcgcagatgaggaggaacataaa
ttcaagcaagctcagaaaatcaggaatccgaaaaatagacttaagaagattttggatgca
tgtaagaacaaaactaaatgtgatggtggtgatgaaattgagtctcaaggtcaggatact
gaagaaccaattaagaaaagccgagggggttgtggtgctcagcagccaaagatcacaatt
gatggtatgaaaatggttgctgaatacaaaattcagaggaagaaaaatgatgacccagag
cagcttcctgagcctgttgagagaaaacaacagctttctgcagaaagggttctaaatgtc
ctgaagaggattagtgatgaagactgccttttacttggtttaaatcctaaatatgcccgt
cctgattggatgattttgcaagttcttccgatacctccacctccagtgagaccttctgtg
atgatggacacatcatcgaggagtgaggatgatttaactcatcagttggcgatgattatt
aggcagaatgagaatctgaggaaacaggagagaaatgggtccgctgcacatataatctca
gaattcgctcagttactgcagtttcatgtagcaacatacttcgataatgaacttccgggt
cagcccagggctacacagagatcaggccggccaatcaaatcaatatgcagtaggcttaag
gctaaggagggtcgcataagaggtaacttgatgggtaaacgtgttgatttttcggcacgt
acagttataactcctgatccaacaattaacattgatgaattgggagtaccgtggagtatt
gctctgaacttaacatatcccgaaactgtgacgccttataacattgaaaggctgaaggaa
cttgttgaatatggacctcatccacctcctggtaaaactggtgccaagtacatcataagg
gaggatggacagaggcttgatcttcgttatttgaagaaaagtagtgatcatcatctggag
cttggatacaaggtggagcggcacttgaatgatggagattttgttctatttaatagacaa
cctagcttgcataagatgtccattatggggcatagaatcaagatcatgccttattccacc
ttccgattaaatttatctgttacttccccttataatgcggattttgatggagatgaaatg
aatatgcatgttcctcaatcttttgagaccagagctgaagttctggagctgatgatggta
cctaaatgtatcgtgtcaccccagtcaaaccgacctgttatgggcattgtgcaggataca
cttttaggatgtcgcaagatcacaaagagagataccttcattgagaaggatgtttttatg
aacattttgatgtggtgggaagattttgatggaaagatacctgctccagcaattttgaag
cctaggccactttggactggaaaacaagtgttcaatcttataattccaaagcagataaat
ctcatgagaacgtcagcatggcactcagaagctgaaactggatttgtaactcctggtgat
actcaagttcgaatagaaaggggggagctcctttgtggcactctttgcaagaaaaccctg
ggaacgtcaacaggaagtcttatacatgtcatatgggaggaagttggtccagatgctgct
cgcaaattcttgggacatacccagtggcttgttaactattggcttttgcagaatgcgttt
agcattggtattggggacacaattgctgacgcagcaactatggaaaaaattaatgaaaca
atttctagagccaagaatgaagtaaaagaacttattagggctgcccaagaaaagcagcta
gaagctgagccagggcggaccatgatggagtcatttgagaatcgagtgaaccaggtcttg
aacaaagcccgtgatgatgctggaagtagtgcccaaaagagcttatcagagagtaacaat
ctaaaggcgatggttacagcggggtcaaaaggaagttttatcaacatatcacaaatgact
gcttgtgtggggcagcagaatgttgaaggtaagcgaatcccatatggcttcatagatcgg
acgcttccccattttacaaaagatgattatggacctgaaagtcgtggttttgtggagaac
tcttatctgcgaggattgactcctcaagaattcttttttcatgccatgggtggtagggaa
ggtctgattgatactgctgtcaaaacttctgagactggatacatccagaggcggcttgtg
aaggctatggaggacattatggtcaaatatgatggtactgttagaaactctctaggggat
gttatccagttcctgtacggggaagatggtatggattctgtttggattgaatcacaaaag
ctggattcccttaaaatgaagaaatctgagtttgatcaggttttcagatatgagattgat
gatgaaaattggaatccaagttatatgttgccagaacatgttgaggatctaaaaaccatt
cgggagttccggaatgtgtttgatgctgaggttcagaaacttgaagcagatcgattccag
cttgggacagagattgctaccactggtgataactcttggcctatgcctgtgaatcttaag
aggcttatctggaatgcacaaaagacttttaaggttgacttaagaagaccgtctgatatg
catcctatggaaattgtggaagcagttgataagcttcaggagaggctgaaggttgtacct
ggtgatgatttaatgagtatggaagctcagaaaaatgccaccctcttcttcaacattttg
cttcgcagcacacttgctagtaagagggtgctgaaagaatacaggcttactcgagaagca
tttgaatgggttattggtgagattgaatcacgcttcttacagtcacttgtagcaccaggg
gaaatgattggttgtgttgcagctcaatccattggtgagcctgcaactcagatgactctg
aacaccttccactatgctggtgtcagtgccaagaatgtgactcttggtgttcctaggttg
agggaaatcataaatgtagcaaagaaaatcaaaactccatcactttctgtttacttgaag
cctgaagtcagcaagacaaaggaaaaggctaagaatgtccaatgtgctttagaatatact
actcttcgcagtgtaacacaagctactgaagtatggtatgaccctgatcccatgagcact
attatagaggaggatgttgactttgtcaagtcctactatgaaatgccagatgaagaagtt
gccccagagaaaatttctccctggttactccgtatagagttaaatcgggagatgatggtt
gataagaagttgagcatggctgacattgctgagaagatcaatctggagtttgatgatgat
ttaacctgcatatttaatgatgacaatgctgaaaaattgattctacgtatccggattatg
aatgatgagggtcctaagggggaattgcaggatgaatcagcagaagatgatgttttcctt
aagaagattgagagtaacatgctcacagaaatggctcttcgaggcattcctgatattaac
aaagtgtttattaaatctggcaaagtaaacaagtttgaggagaatgaaggatttaagcct
gaggtggagtggatgcttgacactgaaggtgtcaatcttttagctgtcatgtgccatgaa
gatgttgatgcgaggaggacaactagtaatcatttgattgaagtaattgaagttcttgga
attgaagcagtccgtcggtccctgctggacgagttgcgtgttgtcatctcttttgacgga
tcttatgtgaattacagacacctggcgatattgtgtgacactatgacttatcgtggtcac
ctgatggccataactcgtcatggtataaaccggaatgatactggtccaatgatgagatgc
tcatttgaggagacagtggacattcttctggatgctgctgtgtttgctgaaacagatcat
ctgaggggtgttactgaaaacattatgttaggtcagcttgctccaattggcacaggagat
tgtgctctttatcttaatgatcagatgctggaacatgccattgatgttcagctgcctagt
tatatggagggcctggattttggcatgactccttcccgctctccaatcactggtacccca
tatcatgatggcatgatgtcaccaaattacttgctgagcccaaatctgcgtttgtcacct
gttacagatgcacaattttctccatatgttggtggcatggcattctctcctacatcatcc
cctggatacagtccctcatctccaggatacagcccatcatctcctggatacagtcctact
tccccaggttacagccccacctcacctggatatagccccacctcacccggttacagtccc
acttcccccacttacagtcctagctctcctggatatagtccaacaagtcctgcatattct
ccaaccagtccatcttactcccccacctctcccagttacagccccacctctcccagttac
agccccacctctccaagttacagccctacatctcctagttatagtcctacatctccaagt
tacagccccacttctccaagttacagccccacctctcctgcctacagcccaacctctccc
gcttacagccccacgtctcctgcatacagtcccacttcaccatcttatagtccaacctct
ccttcctatagccctacttctccttcttacagcccaacctcaccttcttacagcccaacc
tcaccttcatacagccctacctctccatcgtacagccctacctctcccgcctatagccct
acttctcctggttacagtccaacatccccgagctatagtccaacctctccaagctacagc
cctacatctcctagttacaatccttcagctaaatatagcccatccttggcgtattcaccc
agcagtcccagactgtcaccatccagtccatatagtccaacatcaccaaattacagccca
acgtcaccgtcatattcaccaacatctccctcatactctccttcaagcccaacatacagc
cccagcagcccctacaattctggcgtaagcccgaactacagcccaagttcaccacaatac
agtcctagtgcagggtactcgccaagtgcaccaggatactcgccctcatccaccagccag
tacacaccacagatgagcaacaaagatgatgacgagagcagtcggtag
DBGET
integrated database retrieval system
