Malania oleifera: 131162987
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Entry
131162987 CDS
T09312
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
mof
Malania oleifera
Pathway
mof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131162987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mof03019
]
131162987
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
131162987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_14
TPR_16
TPR_8
BTAD
TPR_9
TPR_12
TPR_7
Sel1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
131162987
NCBI-ProteinID:
XP_057975623
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All DBs
Position
8:109488526..109537502
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AA seq
1187 aa
AA seq
DB search
MEKTEEEEEEVVAVLRRLQECVDSHPDDPSHHFNLGLLLWEKAEGSKEVKEKAAEHFVIS
VKLNPKNGAAFRYLGHYYSSAVSADTQRALKCYQRAVSLNPDDSLSGEALCDLLDEGGKE
SLQNAVCREASEKSPRAFWAFRRLGYLQVHQKKWFEAVQSLQHGIRGYPTCADLWEALGL
AYQRLGMFTAALKSYGRAVELEDSRVFALVESGNIFLMLGSYRKGVEHFQQALEICPLSI
SAYYGLASALLGLSKECINLGAFRWGASLLEEASKVAEASTSFAGNISCIWKLHGDIQLT
YANCYPWMEERWNMEIERETFNDSVLSWKRTCYLAAMSANSSYQRALHLAPWQANLYTDI
AVASDLVCSLKGTCKHDLNDWQLPEKMSLGSLLLEGDNSEFWVALGCLSRYKVLKQHAFI
RGLQLDVSLSAAWAYLGKLYRKEGMKQLARQAFDCARSIDPLLALPWAWMSADTNAREPA
SVTDEAYESCLRAVQILPLAEFQIGLAKLALLSGHLSSAQVFGAIQQAVQQAPHYPESHN
LSGLIFESQFDYQSAVASYRLARFAVNAFAGTAPKSHFRDISINLARSLSRAGNALAAVQ
ECEDLKKEGLLDAQGLQIYAISLWKLGRNDAALSVVRDLAVSFSSMERTSGAVSISFICR
LLYYISGKESAVNSILKMPRELLQSSKVSFITAAIHALDLKNRLGVVVSSSRYVVASQEE
NTEMYFLVALGKLIKNGSKNCLGYQSGVDHLRKVLHLYPNSSLIRNLLSYLLLSSKEWNN
THNATRCCILGPSDCINKGLKSGSEILGAGTVACYASSTGGQKLSFPMCRYQCLSGQQAI
QQLQRWLHQEPWNHKARYLLILNLIQKAREEKFPQHLRIILERLIFEALSNKSYSKNNVS
SQYQKFQLLLCSSEIHLQGGDYIGSINHAKSASAILLPSGYLFFAHLLLCRAYAAKNDFI
NLQEEYMKCLQCKTDYCIGWICLKFMKSQYKLQSESNTIELRFQECLEETKSPWNMWMAV
FYLVKGLISARNQDFLTAQEFLAQACSLAGAESCLFLCHGAICMELARQQYECQFLSRAI
KSLNRAQETSLVPLPVVSLLLAQAEASLGSKDNWRKNLHLEWFSWPPEMRPAELFLQMHL
LARELKSWSESSSNLGSQSPKRLILQAIHLNPTCLRYWRVLQKLITN
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacggaagaagaagaagaagaagtggtagctgtcttgagacggttgcaagag
tgcgtagattcccatccagatgacccttcccaccattttaatcttgggctgctcttgtgg
gaaaaagctgaaggctcgaaggaggtcaaggaaaaagcagcggagcatttcgtgatatcc
gtgaagttaaatccaaaaaatggagctgctttcagatacttggggcattattatagcagc
gcagtatctgcagatacgcagagagctctcaagtgttaccagagagccgtttccctcaac
ccggacgattccctatcgggggaagccttgtgtgatttgttggatgaaggaggaaaagag
agtttgcaaaatgcagtgtgccgggaggcttcagagaagtccccaagagctttctgggct
tttaggagattgggttatctacaggtccatcaaaagaagtggtttgaagcagtacagagt
cttcaacatggcataagaggctatcctacctgtgctgatctgtgggaagctttgggtctt
gcctaccagcgattaggcatgttcactgcagctttaaagtcatatgggcgagccgttgaa
ttggaggactctagagtgtttgcattggttgaaagtggaaacatttttctgatgcttggt
tcctatagaaagggggttgagcatttccaacaagcattagaaatctgccctctaagcata
tctgcttactatgggcttgcttcagcactgctaggtttgtcaaaagaatgcatcaacttg
ggtgcatttagatggggagcatcactgttagaggaggcatctaaggttgcagaagcgagt
acttcttttgctggtaatatttcatgcatttggaagttgcatggtgatatccagcttacc
tatgcaaattgttacccatggatggaggaacgttggaatatggaaattgaaagggaaact
tttaatgactccgtactttcctggaaaaggacctgttatctggctgcaatgtctgccaat
agttcttatcagcgggctttgcacttggcaccatggcaagctaatttgtataccgacatt
gcagtagcttcagatctcgtttgctctttgaagggaacttgtaaacatgacctcaatgat
tggcagcttccagagaagatgtccttgggcagcttgttactcgagggtgataatagtgag
ttttgggtggcactgggatgtctttctcgttacaaggtgttgaaacaacatgcctttatc
aggggattgcaattggatgtatccctttctgctgcttgggcataccttgggaagctatat
cgaaaagagggtatgaagcaattggccaggcaagcatttgattgtgccagaagtattgat
cccttgcttgcattaccatgggcatggatgtcagctgatacgaatgctagggagcctgca
agtgtaacagatgaagcttatgaaagctgtttaagggctgtacagatattgccacttgca
gagtttcaaattggtcttgcaaaacttgctttgctttcaggtcatctatcatctgcacag
gtatttggtgccatccagcaggctgtgcagcaagcacctcactatccggaatcacataat
ttgagcggtcttatttttgagtcacaatttgattatcaatctgctgttgcttcttatcga
ttagcacgctttgcagtcaacgcttttgcaggcactgcaccaaaatcccatttcagagat
atatcaattaatctcgccagatccctcagtagggcagggaatgcccttgctgctgtgcaa
gaatgtgaagatttaaagaaggaaggtctgcttgatgcacaaggtctgcaaatatatgcc
atctctttatggaaactgggcagaaatgatgccgccctctctgtggtgagagatttggca
gtgagtttttcatccatggaacggacatctggggctgtttctattagtttcatatgtaga
ttgctgtactacatttccggcaaggaatcagcagttaatagcattctgaaaatgccaagg
gaactacttcagagttcaaaagttagctttataacagctgcaattcatgccttggatcta
aaaaatcggcttggtgtagttgtttcaagcagtcgttatgttgttgcatctcaggaggaa
aacacagaaatgtattttttagttgcacttggtaaacttatcaagaatgggtcaaaaaat
tgccttggatatcagagtggagttgatcaccttagaaaagttcttcatctgtatccaaat
agtagtttaataaggaacctgctcagctatcttttactatcaagtaaagagtggaataac
actcacaatgcaactaggtgctgcatcttagggccttctgactgcatcaataaaggacta
aaatcaggaagtgagattcttggtgctggaacagttgcttgttatgcttccagcactgga
ggccaaaaattatctttcccaatgtgcagataccagtgcctgagtggacagcaagcaatc
caacaactccaaagatggctacatcaagaaccatggaaccacaaggcacggtacttgctt
atacttaatttaatacagaaggcacgtgaagagaaatttcctcagcatcttcgtatcata
cttgagcggctgatttttgaggccctttccaataaatcatattcaaagaacaatgtttct
agtcaatatcaaaagttccagcttctactatgttcttcggagatccatttgcaaggtggg
gactatattggctctatcaatcatgctaaatctgcttcagcaattttgctacccagtggc
tatctattttttgcacacttgttgctatgccgtgcctatgctgcaaaaaatgattttatt
aacctgcaggaagagtatatgaaatgcttgcagtgcaaaacagattattgcattggctgg
atatgtcttaaatttatgaaatctcaatacaaattacaaagtgagtcaaataccatagaa
ttgagattccaggagtgcttggaagagaccaagagtccatggaatatgtggatggctgtc
ttttatttggtgaagggtctgatttctgcacggaatcaggatttccttactgcacaagag
tttcttgcccaagcttgctctttggcaggtgccgagagttgcctttttctctgtcatggt
gctatttgtatggagctagccagacagcaatatgagtgccagtttctgtcacgtgctata
aagagtctcaacagggctcaagagacttctcttgtacccttgcctgttgtgtcactgttg
cttgctcaagctgaagcaagccttggttccaaagataattggagaaaaaacctccatctt
gagtggttttcttggccgccagaaatgaggcctgcagaactctttttgcaaatgcatttg
cttgctagggaattgaaatcttggtctgaatcttcatccaatttaggatcccagagccca
aagagattgattcttcaggcaatccatttgaaccctacttgcttgagatattggagggtt
ttgcagaagttaattaccaactga
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