Malania oleifera: 131163710
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Entry
131163710 CDS
T09312
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mof
Malania oleifera
Pathway
mof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131163710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mof03019
]
131163710
03041 Spliceosome [BR:
mof03041
]
131163710
03009 Ribosome biogenesis [BR:
mof03009
]
131163710
03016 Transfer RNA biogenesis [BR:
mof03016
]
131163710
Enzymes [BR:
mof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131163710
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131163710
Spliceosome [BR:
mof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131163710
Complex C
U4/U6.U5 tri-SnRNP related factors
131163710
Ribosome biogenesis [BR:
mof03009
]
Eukaryotic type
Pre-60S particles
Helicases
131163710
Transfer RNA biogenesis [BR:
mof03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131163710
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
131163710
NCBI-ProteinID:
XP_057976385
LinkDB
All DBs
Position
9:52824248..52859533
Genome browser
AA seq
992 aa
AA seq
DB search
MGSQKRKLQEEQPAVSLPPHKLQREDGLVALNEPVACVHDVSYPEGYVPSTISSSAPPNS
KPAKEFPFVLDPFQSEAIKCIDSCESVMVSAHTSAGKTVVALYAIALSLQNKQRVIYTSP
IKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWVI
FDEVHYMRDRERGVVWEESIVMAPKKSRFVFLSATVPNAKEFADWVAKVHYQPCHIVYTD
YRPTPLQHYIFPSGGVGLYLVVDEKGKFREDSFQKALNALVAAADGDKRRENGKWKKGFV
VGRVGEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMAKMDLNEDDEKVNIETIF
WSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATET
FSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDEKLE
PSTAKMMLKGSADSLNSAFHLSYNMLLNQMRCEDGDPEDLLRNSFYQFQADRAIPDLEKQ
AKDLEEERDSIKIEEEESLEDYYTLLQQYKSLKKDIRDIIFSPRYCLPFLQPGRLVCIQC
TESDENSPSFSIEDQVTWGVIINFERVKGLSEGDDMSRKPEDANYTVDVLTRCSVNRDGV
AKKTIKIIPLKESGEPIVVSVPISQIDSLSSIRLIISKDLLPVETREHTLKKVLEILSRF
SKGVPLLDPEDDMKVQSGSFKKTARRLEALESLFEKHEVAKSPLIEQKLKVLHMKKELTA
KIKSIRRTMRTSTVLAFKDELKARRRVLRRLGYITSDDVVELKGKVACEISSADELTLTE
LMFNGVLKDIKVEEMVSLLSCFVWQEKLQDAPKPRDELELLFTQLQDTARRVAKVQLECK
VQIDVDSLVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIQA
AKSIGETELEMKFEEAVSKIKRDIVFAASLYL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgcagaagagaaaacttcaagaagagcaaccggcagtctctctccccccacac
aagctacagagagaggacggcttagttgctctaaacgagcccgtggcttgcgtccacgac
gtgtcctaccccgaggggtacgttccttccacgatttcctcttctgccccgccgaattcg
aagccagctaaggaatttccattcgtgctcgaccccttccagtccgaagcaatcaaatgc
atcgacagctgcgagtctgttatggtatctgcccatacatcagcaggaaaaactgttgta
gcgttatatgctattgctttgtcattgcaaaacaagcaacgggtaatctatacatcacct
atcaaggcactcagcaaccaaaaatatagagagtttaaagaagagttctctgatgttggt
ctgatgactggggatgtcacaattgatcccaatgcttcatgtttggtgatgacaacagaa
atttggcggagtatgcagtacaaaggatcagaggttacacgggaggtggcttgggtaatt
tttgatgaggtacattacatgcgtgacagggaaagaggtgtggtatgggaagagagcatt
gttatggccccgaagaaatcacggtttgtgttcctctcagcaacggtgcctaatgcaaag
gagtttgctgattgggttgccaaggtgcactatcaaccatgccatattgtttatactgat
tatcggcctacaccccttcagcattatattttcccctctggaggtgttggcttatacttg
gtggttgatgaaaagggaaaatttcgtgaggatagctttcagaaagcattgaatgcactt
gttgctgctgccgatggtgacaagagaagggagaatgggaagtggaagaagggttttgtg
gtgggcagagttggtgaagaaagtgacattttcaagatggtgaaaatgattattcagcgt
caatatgatcctgttatacttttcagctttagcaaaagggaatgtgaatctcttgcaatg
cagatggcaaaaatggatctaaatgaggatgatgagaaagtaaacatagaaacaatcttt
tggagtgctatggacatgctttcagatgatgacaagaagctacctcaggtttcaaatatg
ctgcccctcttgaaacgtggtataggtgtacatcattctggcttgctccccatactaaaa
gaagtgattgagatattatttcaagaaggtctcattaagtgtttgtttgccacagagact
ttcagcataggattgaacatgccagccaaaactgttgtgtttacgaatgttcgtaaattt
gatggggataagtttagatggctatctagtggagaatatatacagatgagtggtcgtgct
ggccgtcgaggcattgatgaacgggggatatgcatactcatggtggatgagaagttggaa
ccttctacagccaaaatgatgcttaaaggaagtgctgattctttgaacagtgccttccat
ttaagctacaacatgcttttaaatcaaatgcgatgtgaagatggtgatcctgaagatttg
cttcgaaattcattctaccaatttcaagctgatcgtgccattccagatcttgagaaacaa
gcaaaggaccttgaagaagagagagattcaattaaaattgaagaagaagaaagtttggag
gactattacactctgctgcagcaatataaaagtttgaaaaaggacatccgtgatattatc
ttttctccaaggtactgtttgccgtttttgcagcctggcaggcttgtgtgtatccaatgc
actgaaagtgatgaaaattccccatctttctccattgaggaccaggtcacatggggagtg
ataatcaattttgaaagggttaaaggactttctgaaggagatgatatgagcagaaaacca
gaggatgccaactacacagtggatgttcttacgagatgttcagtaaatagggatggagtt
gccaaaaaaacaattaagattattccattgaaggaatctggagaacctattgttgtgtct
gtcccaatctctcagattgacagtttaagtagcatccgcttgatcatatcaaaagatctt
ttgccagtggagactagagagcataccctgaagaaggtgttggaaattctttcaagattt
tctaaaggtgtgcccctcctggatcctgaagatgacatgaaggttcaaagtggctcattc
aaaaaaactgcccgcaggttagaggccttagaaagtctatttgagaagcatgaagttgca
aaatctccacttattgagcaaaagctcaaagttttacacatgaaaaaagaattaacagca
aagatcaagtcaattaggagaacaatgcgcacatcgacagtgttggctttcaaagatgaa
ctcaaggcaaggagacgagttctacgaagactaggatatatcacaagcgatgatgttgtt
gagttgaagggtaaggttgcctgcgaaatcagtagtgcggatgagttgacactaacagag
ctgatgttcaatggggttttgaaggacattaaggtggaagaaatggtgtctcttctctct
tgtttcgtatggcaggaaaagcttcaggatgctccgaagccaagggatgagcttgagttg
ctctttacacaattacaggatacagcacgaagggttgctaaagttcagctggaatgcaag
gtccaaattgatgttgatagtcttgtcagctcattccggcctgatataatggaggctgtg
tatgcttgggcaaaaggatctaaattctatgagatcatggaaattacacaggtctttgag
ggtagcttgatcagggctatcagaagactggaggaagtccttcagcagctgatacaagct
gcaaagtccattggagaaactgagcttgaaatgaagtttgaagaggctgtatccaaaatc
aaaagagacattgttttcgcagcatctctatatttgtga
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