Malania oleifera: 131164547
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Entry
131164547 CDS
T09312
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mof
Malania oleifera
Pathway
mof03013
Nucleocytoplasmic transport
mof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131164547
03015 mRNA surveillance pathway
131164547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mof03019
]
131164547
Enzymes [BR:
mof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131164547
5.6.2.5 RNA 5'-3' helicase
131164547
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131164547
mRNA cycle factors
Common to processing body (P body) and stress granule
131164547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
131164547
NCBI-ProteinID:
XP_057977805
LinkDB
All DBs
Position
9:complement(5695889..5731350)
Genome browser
AA seq
1267 aa
AA seq
DB search
MDSQANNLFETASQPDTGGDAYTFLEFNTQGEDFDYPEFSELSQPIRSSSVWPTPSDSVA
DPTDRSVSGSDHQSDASPVSAAPGSATKARGGASGGGSSSGAVDALAAGMSGLNFEETGD
DENYEYGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWD
LSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGV
DDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYF
VFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVN
HGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAP
GLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQ
GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP
ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRM
HPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSY
LNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVSNDPVASSSP
HADRRSSRSRGSYMPSCPPNGTHKPGLHPAGFTMPRVPLAPFHGGPPSQPYAIPTRGAVH
GPVGAVPHVPPTGSRGFGAGRGNAGTPIGSHLPHQQGSQQAIGNIASNFNFPALENPNSQ
PSVGGPLSQPGFVANMPVQGPNQSFRDGFSIGGMSQDFLGDDFKSQGSHVPYNVADFSTQ
ASQSGYAVDYVTQGAQAGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQALFTQVGF
NDPSQDDASQAHFGVTNPNSLQSQGLMNPLYSQPFAHYSTQPVNMQAPQQSPQQGQSSQN
QKLHYSG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaagcgaacaacctcttcgagacggcgtcgcagcccgataccggaggcgac
gcctacacgtttctcgaattcaacacgcagggggaggactttgattaccctgaattctcc
gagctttcgcagccgatcaggtcctcttccgtgtggccgacgccatctgattccgttgcg
gaccccacagaccgtagcgtcagtggttccgatcatcagtcggatgcatcgccggtctcc
gccgcccctggtagcgccaccaaggccaggggcggtgccagtggtggcggcagtagcagt
ggcgccgttgatgctctggcggccggcatgagtgggttgaacttcgaggagactggggac
gatgaaaattatgagtacggtaagggggattttacggagcacgcgtgtcggtactgcggg
gtgcagaacccggcttgtgttgtgaggtgtaatgtgccttcttgtcgcaagtggttttgt
aattcgcgaggaaacacttctggttcgcacatagtcaatcacctggttcgagcaaagcat
aaggaagtttgtcttcataaagacagtcctttgggagaaacaattcttgaatgctacaat
tgtgggtgccgaaatgttttccttcttggatttatctctgcaaagacggagagtgttgtt
gttcttctttgcagggaaccttgcttgagtgttaatgcattgaaggacatgaattgggac
ctgagtcagtggtgtccccttattgatgatagatgttttctgcagtggcttgttaaggtc
ccatctgaacaggagcagttacgggcacgccagatcagcgctcaacaaataaacaaggta
gaggaactttggaaaacaaatcctgatgcttcgctagaagatcttgagaaacctggtgtt
gatgatgagcctcaacctgtagccttgaaatatgaagatgcctatcagtatcaaaatgta
tttgcaccgcttatcaagcttgaagctgactatgataaaatgatgaaagaatctcaaagc
aaagacaatgtgacgatacgttgggatattggtcttaacaagaaacgcatagcatatttt
gtttttcccaaggaagataatgagctacgtcttgtacctggcgatgagttgcgtttacgt
tactctggagatgctgctcatccagcatggcaatcagtggggcatgtgatcaaactcact
gcacaagaggaggttgcacttgagcttcgtgccagtcagggagtccctgttgatgtaaac
catggtttcagtgttgattttgtatggaagagtaccagttttgatcggatgcaaggggca
atgaaaacttttgccgtggatgaaacaagtgtcagtgggtatatttaccaccacttgttg
ggtcatgaagttgaggttcagatggttcgtaatacgctacctcgccgttttggtgcacct
ggtctcccagagcttaatgcatctcaagtttttgccgtaaagagtgtccttcaaaaacca
ataagtttgattcagggtccacctggaactggaaaaaccgtcacatctgctgcaattgta
tatcacatggccaaacaaggtcaagggcaggttttggtttgtgctccaagtaatgtggct
gttgaccaactagctgaaaagataagtgccacaggattgaaggttgtcaggctctgtgca
aaatccagggaagcagttagttctcctgtggagcatttgactcttcactatcaggttcga
caccttgacacatctgaaaagagcgaacttcataagttgcagcaattgaaagatgaacaa
ggagaattatccagcagtgatgagaagaaatacaaagctctgaagcgagcgacagagagg
gaaatttcccagagcgctgatgtaatttgttgtacatgtgttggtgctggagatcctaga
ttggcaaattttagattccgccaggtacttattgatgaatctactcaagcaactgagcct
gaatgtctcattcctctggttcttggagtgaagcaggttgttcttgttggtgaccattgc
cagcttggtcccgtcattatgtgcaagaaggctgctcgggccgggttggctcagtctctc
tttgaacgccttgtgctgcttggtgtgaagccaatacgattacaggttcagtaccgcatg
cacccatccctgtcagaattcccttctaacagcttctatgaaggtacgctgcaaaacgga
gtgaccattaatgaaaggcaatcgtcaggcattgatttcccatggccagtgccaaaccgc
ccaatgttcttttatgtccagatgggacaagaggagatcagcgccagtggaacatcctat
cttaatagaacagaggctgccaatgttgaaaaaattgtaaccactttcttgcggagtggt
gtagttcctagtcagataggggtgattactccatatgaaggacagagagcatatattgtg
aattatatgtcgagaaatggtgctcttagacagcagctttacaaggaaattgaggtggct
agtgtagattctttccaagggagggaaaaagattacattattttgtcttgcgtaaggagc
aatgaacatcagggtattgggtttctgaatgatcctcgtaggttgaatgttgcactcact
cgtgctcgttatggtatcgttatcctgggtaatccaaaggttctgagcaaacagccgcta
tggaatagcttattgacacactacaaggaacatgaatgcttggtggaaggacctctgaat
aacttgaagcagagtatggttcaatttcaaaagccgaaaaagatctacaacgatcgtagg
cttttctttggcggaggacctggaatagtatctaatgacccagttgcctcatcaagtcca
catgctgatagaagaagcagtcgttccaggggttcttatatgccatcgtgcccaccaaat
ggtactcataagcctggactacaccctgctggttttacaatgcctcgggttccccttgca
ccatttcatggcggtcccccatcacagccatatgctattccaactcgtggggctgtacat
gggccagttggagctgttcctcatgttcctcccacaggtagccggggatttggtgctggg
cgtggtaatgctggcactccaataggcagtcatcttccacaccagcaaggatcacagcaa
gccattggaaatattgcatcaaatttcaactttcctgcattggagaatcctaatagccag
ccatctgtgggcggtccattatctcaacctggatttgttgccaatatgccagttcaagga
ccaaaccaatcatttcgtgatggtttttccattggaggaatgtctcaggatttcttgggt
gatgattttaaaagccaaggatctcatgttccttataatgttgcagacttctctacacag
gcttctcaaagtggatatgctgtcgattatgttacacaaggagcacaagctggtttccct
ggaaactttctgaaccagaattctcaagcaggatattcacgttttggtagtggaaatgat
ttcatgtctcaggactatatgactcatggatcacaagctctattcacacaggtgggcttt
aatgacccatcacaagatgatgcttctcaagcccactttggagtgacgaatcccaactct
cttcagtctcagggcctgatgaatcctctctactctcagccctttgcccactacagtact
cagccagtgaacatgcaggctccacaacaatcaccccaacagggccaaagctctcaaaac
caaaaactacactacagtggttga
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