Malania oleifera: 131168164
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Entry
131168164 CDS
T09312
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mof
Malania oleifera
Pathway
mof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131168164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mof03021
]
131168164
03019 Messenger RNA biogenesis [BR:
mof03019
]
131168164
Transcription machinery [BR:
mof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131168164
Messenger RNA biogenesis [BR:
mof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131168164
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
131168164
NCBI-ProteinID:
XP_057983408
LinkDB
All DBs
Position
11:3227277..3242988
Genome browser
AA seq
1165 aa
AA seq
DB search
MEMESSRRSLERSRELGLKKPRLVEEADRDRNPNGRALPPRPAASGTSSLPSRFRTSERD
AERDYSSRGGAFQQQQQQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLHAAKAVAA
TVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDSSVHPGMR
HLFGTWKGVFPPQPLQMIEKELGLQSAINGSSSSASTSRPDSQSQRPPHSIHVNPKYLEA
RQRLQQSSRAKGMANEITGSVADATEDMERLNRMAGMGTTRPWTELSVKIHNTHRPHREV
LSESVHEKTIGAAYGDYEFGSDASKPLGLETGRANERATELGHDKQWYGAGSGVSEISRQ
RNGFDIKHKFPSYSASRSANADVHPPQTQSIASKPSSGMSWSWKNSEEEEFMWGDMNSRL
TDHGAANSMMKDRWNPDDSGKLDFETHLRKPESMNNVGSRVERDAPTDSPSQERNEHAVF
GPRTSSSWSMQEPHSMDGLNLLGTSTSSLPSMGLRPQMGSSHGLASGAGLFANALGSSGT
TGQQQGRHSHGNASPSGQSLMLQHPSSPSFSARHPHQLYLNLAEQDNNQTQSLPQPDFKA
SQLSGQFNIGHHNQVARDTVTIPAHNIQLSNLQKLQLQKLQTSSPSIPSFQSKHRIPCSQ
QMQVDLAQPESSAQSQKPLLPQIPAFGSHSSMVNSAASEHSSSLAAEVPGQSNTSSLLDA
VIKSGILSKTSATGTVSKLSFQDTGPMLSQSTVQPPLPSGPPPTQFTSSGLIVASTALLG
PHSHENSSNFVNPSQRKFERPPLPPGPPPPSLVGGASAQISNVGSNTVNPITNLLSSLVA
KGLISAGKTESQGVISAEKTESPSVMPLQGPNQSKRPGLTTTSSMTVSSAPVSSVIAASS
TTDEASFLEPDAKTMPVSLAPVPSAVLISSAINEVSFSEPNVKSLVALQSSTAEVKNIIG
FQFKPDVIRESHSSVVSGLFDDLPHRCSICGLRLRLKERLDRHLEWHASRITESDSLGSA
SRKWYVNSGEWIGVGLPSGFKSTCLVEGPRNATEESEEIVAADESQCVCILCGELFEDFY
SKERDEWLFKGAVYMTIPSPYYDGRPANETSAQGPIVHAHCITESSICDVGLANGIKMVS
FFILTEDVSWFDFIVDGLCIYPLRY
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagttctcgtcgatcacttgaaagatcgagagaactgggtttgaagaaa
ccccgattggttgaagaggctgatcgtgatcgcaacccaaacggtcgcgccttacctcct
cgccctgcagcttctggaaccagttcgttgccatcaaggttccgaacaagcgagagagat
gctgagagggattattcaagtcgaggaggtgcttttcaacaacagcagcagcagcatcag
gagcttgtgagtcagtacaagactgcacttgctgagttgacgttcaattcgaaaccaatc
atcactaacctcaccattatcgctggcgagaacctgcacgcagcgaaggccgttgctgcc
accgtgtgcgccaacattcttgaggtacctagtgagcaaaagctgccatcactctatctc
ttggacagtatagtgaagaatattggcagggactacattaaatactttgctgccagatta
cctgaggtattttgcaaggcatatagacaggttgactcttcagttcatcctggtatgcgg
catctttttggaacttggaaaggagttttccctcctcagcctcttcagatgattgagaaa
gaacttggccttcaatcggcaattaatggatcatcttcatcagcctcaacatctaggcct
gattcacagtcgcaacggccaccacatagcattcatgtgaatcccaaatatttagaggca
aggcagcgtcttcagcagtcaagcagggcaaaaggtatggccaatgaaataactggatct
gtggctgatgcaactgaagatatggagaggctgaacagaatggcaggcatgggtactact
aggccatggacagaactttccgttaaaattcataatactcatcgtccccatagggaagtg
ctgagtgaatctgttcatgagaagacaataggtgcagcatatggagattatgaatttggt
tctgacgcttcaaagcctttgggcttggagactgggagagccaatgagagggctactgag
cttgggcatgacaagcagtggtatggagctggcagtggcgtttcagaaatttcccgccaa
cgaaatggttttgatattaagcataaattcccaagttattcagcatccagatctgcaaat
gctgatgtgcatccaccgcaaacacagagcattgcaagtaaacccagtagtgggatgtct
tggagctggaagaactctgaggaggaggagttcatgtggggtgatatgaactctaggttg
actgatcatggtgcagcaaatagcatgatgaaagatcgatggaatccagatgattccgga
aaattggattttgaaacccacctccgaaaaccggaaagcatgaacaacgtggggtctagg
gttgaaagagatgctcccactgattcaccatcccaagaacggaatgaacatgcagttttt
ggacctaggacatcatcttcatggtcaatgcaggaaccacactcgatggatgggctgaat
ctgttaggtaccagtactagttctttgcccagcatgggactgcgaccgcaaatggggtct
tctcatggcttagcctctggtgctggcttgtttgccaatgccttgggttccagtggaacc
acagggcaacaacaagggcgtcacagtcatggaaatgcatcaccttctggacagtcactc
atgctccagcacccttcgtcaccgtcattttcagcccgccacccacaccaactatatctc
aatttggctgagcaagacaataatcaaactcagtccctaccccagcctgattttaaagca
tcccaactttctgggcagtttaacataggacatcataatcaagtcgctcgggacacagtg
actattccagctcataacattcaactgagcaacttgcaaaaattacagcttcaaaagctg
cagacttcatctccttcaataccttcttttcaatcaaagcaccgaattccctgctcacag
cagatgcaggttgatcttgcacaacctgaatcttctgctcagagccaaaagcctcttttg
cctcagatcccagcttttggaagtcactcatcaatggtgaattctgctgcatcagaacat
tcaagttctcttgctgcagaagtccctggacagtcgaacacaagtagtctgttggatgcc
gtcataaagagtggaattctctccaaaacttcagctactggtactgtatcgaaactgagt
tttcaagacacggggccaatgctatcacaatcaactgttcagcctcctcttccaagtggg
cctccgcctacccagtttacttcatcagggcttatagttgcatctacagctttattaggt
cctcattctcatgagaactcatcaaattttgtgaatccttctcagagaaagtttgaacga
ccaccacttccgcctggtcctccacctccatctcttgtaggtggtgcatctgcacaaatt
tcaaatgttgggagtaacactgtgaatccaattacaaatcttttgagctcattagttgca
aagggtttgatatctgcaggaaagacagagtcacagggcgtgatatctgcagaaaaaact
gagtctcccagtgtcatgccactccaagggcccaatcaatccaagagaccaggtttaacc
actactagctctatgactgtttcttctgctccagtttcctcagtcattgctgcttcctct
accacagatgaggcttctttcttggagcctgatgctaaaaccatgccagtttctttggct
ccagttccctctgctgttcttatttcatctgccatcaatgaggtttctttctcagaacct
aatgttaaaagcttggttgccttacagtcctccacagcggaagttaaaaatattataggc
tttcagtttaagccagatgtaatccgagaatcacattcttcggttgtcagtggcctcttt
gatgatcttccacatcgctgcagcatatgtggcctccgacttagacttaaagaacggctt
gatagacacttggagtggcatgcttcaagaattactgagtcagacagtttaggtagtgca
tcaaggaaatggtatgtaaactcaggtgagtggattggtgtaggacttccatctgggttt
aagtccacttgtttggtggaagggcctcgaaatgcaacagaagagagtgaggagattgta
gctgcagatgaaagtcagtgtgtgtgtattttgtgtggtgagctgtttgaagatttttac
agtaaagagagggatgaatggctgttcaaaggagctgtgtacatgaccattccatctcca
tattatgacgggagacccgcaaatgagacttctgcgcaggggcctattgtacatgcacat
tgtatcacagagagctcaatttgcgatgtgggattggcaaatggcattaaaatggtaagc
ttctttatcttgacagaggatgtcagctggtttgactttattgttgatggtttgtgtatt
tatccattgagatattaa
DBGET
integrated database retrieval system
