Methylobacterium organophilum: MMB17_16115
Help
Entry
MMB17_16115 CDS
T08093
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mog
Methylobacterium organophilum
Pathway
mog03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mog00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMB17_16115 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mog03021
]
MMB17_16115 (rpoC)
03400 DNA repair and recombination proteins [BR:
mog03400
]
MMB17_16115 (rpoC)
Enzymes [BR:
mog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMB17_16115 (rpoC)
Transcription machinery [BR:
mog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMB17_16115 (rpoC)
DNA repair and recombination proteins [BR:
mog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMB17_16115 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UMY16236
LinkDB
All DBs
Position
3445701..3449909
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNQQAQPQSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYCVIEPGLTPLKERQLLSEEEYLRAQEEYGEDSFTA
MIGAEAIRRILQELDLDGIANALREEIATTTSELKPKKLMKRLKIIEAFQQSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVADGAVGAYNPDNKQNPMQGVFG
DIGELEHALAAKTVSLHSKIRWRWKGIGPDGEPMVKIYDTTPGRVILSGVLPLHPKVPFD
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMALGFSHAFRAGISFGKDDMVVPENK
WSIVDATRALVKDYEQQYNDGLITQGEKYNKVVDAWAKCSDKLAQEMMGRISAVQKDENG
ADKQVNSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREKDCGTQNGIRMRAIVDAGQVVAP
LATRILGRAAAEELVAQDGSVIVQIGETIEEKHLPLITAAGIQEVKIRSVLVCATKSGVC
ATCYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFIESSFEG
TVKIRNRALAKNSDGDLIATGRNVAVVIVGPDGVERAVHRLQYGAKVRVDEGDKIKRGQR
IAEWDPYTRPIITEVDGIVAYEDLYDGQSITETTDESTGIAKRVVIDWRGSSRTSDLKPA
MLVVDQDGKPVKLPRGSDARYFLPVDAIIGSDPGGKVKAGDILARVATESAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGTISFGRDYKNKRRLTLTPHDGSDPVEYLIPKGKHIHL
QDGDVVELGDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVLINDKHIEVIVR
QMLQKVEVTDGGDSDILPGDQIDRTELAEYNEKLEAEGKKPIQGVPVLLGITKASLQTKS
FISAASFQETTRVLTEAAVNGKVDTLEGLKENVIVGSLIPAGTGSLAADIKAIARRRDNL
ILQQRAANSEAQPVGELPPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaatcagcaggcccagccgcagagcttcgaccag
atcaagatctcgatctcctcgccggagaagatcctgtcctggtcctacggcgagatcaaa
aagcccgagacgatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaagtcaccctcgcccgcgtccggcgc
gaccgcatgggccatatcgagctcgcggcgcccgtcgcccatatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatggcgctcaaggacctggagcgcatcctc
tatttcgagtcctactgcgtcatcgagccgggcctcacccccctgaaggagcgtcagctc
ctgtcggaggaggagtacctgcgcgcacaggaggagtacggtgaggattcgttcacggcg
atgatcggcgccgaggcgatccgccggatcctgcaggagctggatctggacggcatcgcc
aacgcgctgcgtgaggagatcgccaccacgacctccgagctgaagcccaagaagctgatg
aagcgcctcaagatcatcgaggcgttccagcagtcgggcaacaagccggaatggatgatc
ctcacggtcgtgcccgtcatcccgccggacctgcgcccgctggttccgctcgacggcggc
cgcttcgccacgtcggacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtggacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtggtcgga
ccggagctgaagctccaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
cccttcatctacgcgcgcctcgacgccaagggcttctcggccacggtgaagcaggccaag
aagctcgtggagaaggagaagcccgaggtctgggacatcctggacgaggtgatccgcgag
catccggtgatgctcaaccgcgcgccgacgctccaccgtctgggcatccaggccttcgag
ccgaagctgatcgagggcaaggcgatccagctgcacccgctggtctgcgccgccttcaac
gcggatttcgacggtgaccagatggccgtgcacgtcccgctgagcctcgaggcgcagctg
gaagcgcgcgtcctcatgatgtcgaccaacaacatcctgcatcccgcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctggggctctactacctgtcgatcgtcgccgac
ggcgcggtcggcgcgtacaaccccgacaacaagcagaacccgatgcagggcgtgttcggc
gatatcggcgagctggagcacgcgctcgcggccaagaccgtgtcgctgcactcgaagatc
cggtggcgctggaagggcatcggcccggacggcgagcccatggtcaagatctacgacacc
accccgggccgggtgatcctgtccggcgtgctgccgctgcacccgaaggtgcccttcgac
gtcgtcaacaagctgatgacgaagaaggagatctccgcgatgatcgacaccgtctaccgc
cactgcggtcagaaggagtcggtgatcttctgcgaccgcatcatggcgctcggcttcagc
cacgccttccgtgcgggcatctccttcggcaaggacgacatggtcgtgccggagaacaag
tggtctatcgtggacgcaacccgcgccctcgtgaaggactacgagcagcagtacaatgac
ggcctgatcacccagggcgagaagtacaacaaggtcgtcgacgcctgggcgaagtgctcc
gacaagctcgcccaggagatgatgggccgcatctccgcggtccagaaggacgagaacggc
gccgacaagcaggtcaactcgatctacatgatgagccactccggtgcccgtggctcgccc
gcccagatgaagcagctcgcggccatgcgcggcctcatggccaagccgtcgggcgagatc
atcgagacgccgatcatctcgaacttcaaggaaggcctcgacgttctcgagtacttcaac
tcgacccacggcgcccgtaagggcctcgcggacaccgcgctgaagaccgccaattccggc
tacctgacccgccgcctcgtcgacgtggcccaggacgcggtgatccgcgagaaggattgc
gggacgcagaacggcatccggatgcgcgccatcgtggacgcgggccaggtcgtggccccg
ctcgcgacccgcatcctcggccgcgccgcggcggaggagctcgtcgcccaggacggcagc
gtcatcgtccagatcggcgagaccatcgaggagaagcatctcccgctgatcacagccgcc
ggcatccaggaggtgaagatccgctcggtgctcgtctgcgccaccaagagcggcgtctgc
gccacctgctacgggcgcgacctcgcccgcggcacgccggtcaacatgggcgaggccgtc
ggcgtcatcgcggcgcagtccatcggcgagccgggcacccagctcaccatgcgcaccttc
cacatcggcggcgccgcccagatcgcggattcgtccttcatcgagtcgagcttcgaaggc
acggtgaagatccgcaaccgggcgctcgcgaagaactccgacggcgatctcatcgccacc
ggccgcaacgtggccgtggtgatcgtcggtcccgacggcgtcgagcgggcggtgcaccgc
ctccaatacggcgccaaggtgcgcgtggacgagggcgacaagatcaagcgcggccagcgc
atcgcggagtgggacccctatacccggccgatcatcaccgaggtcgacggtatcgtggcc
tacgaggatctctacgatggccagtccatcacggagaccaccgacgaatcgaccggcatc
gccaagcgcgtcgtcatcgactggcgcggctcgtcgcggacctccgacctgaagccggcg
atgctcgtcgtcgatcaggacggcaagcccgtgaagctgccgcgcggctcggatgcccgc
tacttcctgcccgtcgatgccatcatcggctccgacccgggcggcaaggtgaaggccggc
gacatcctggcccgcgtcgcgaccgagtcggccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggaactgttcgaggcccggcgcccgaaggacgcggcgatcatcgccgag
aagtcgggcacgatctccttcggccgcgactacaagaacaagcgccggctcacgctgacg
ccgcatgacgggtccgatccggtcgagtacctgatcccgaagggcaagcacatccacctt
caggacggggacgtggtcgagctcggcgactacatcgtcgacggcaacccggcgccgcac
gacatcctggcgatcaagggcgtggaggagctcgcggcttacctcgtcaacgagatccag
gaggtctaccggctccagggcgttctcatcaacgacaagcacatcgaggtgatcgtccgg
cagatgctgcagaaggtcgaagtgaccgacggcggcgattcggacatcctgcccggcgac
cagatcgaccgcaccgagctcgcggaatacaacgagaagctcgaggcggagggcaagaag
ccgatccagggcgtcccggtcctgctcggcatcaccaaggcgtcgctgcagacgaagtcg
ttcatctcggcggcctcgttccaggagaccacccgcgtcctcaccgaggcggcggtcaac
ggcaaggtcgataccctggaaggcctcaaggagaacgtgatcgtcggctcgctgatcccg
gcagggacgggctcgctcgcggcggacatcaaggcgatcgcccgccgccgcgacaatctc
attctccagcagcgcgccgccaacagcgaagcgcagccggtgggcgagctgccgccggcc
gccgagtga
DBGET
integrated database retrieval system
