Methylobacterium organophilum: MMB17_19755
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Entry
MMB17_19755 CDS
T08093
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mog
Methylobacterium organophilum
Pathway
mog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MMB17_19755 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mog03400
]
MMB17_19755 (mfd)
Enzymes [BR:
mog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMB17_19755 (mfd)
DNA repair and recombination proteins [BR:
mog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MMB17_19755 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_16
MFD_D3
SecA_DEAD
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UMY16864
LinkDB
All DBs
Position
complement(4184439..4188038)
Genome browser
AA seq
1199 aa
AA seq
DB search
MAKPKPPAPQPAPKPQTARFALPKSAPLTQALEALKRGDSPTLASVPEGFDTLVAADLAR
ALSGSFEGPAVLVHVARDSGRSNAFQTALKFVAPEIEVMSFPAWDCQPYDRVSPNAAIAA
QRMTALSRLTRSRSSEEKPRILCTTVNAMVQRVPPRDRVAVETFSAAIGNVVPMDKVVAW
VEANGFLRTGTVRDTGEYAVRGGILDLSPPGLPNPIRLDFFGDTLETIRAFDPETQRTVG
SLRSLDLVPMSEVQLTTETIRRFRQGYLTSFGAANRDDRLYETVSEGRRYAGLEHWMPLF
YESLDTLFDYLGDVPFLFDAQVEDAAAERFALVQDYFQARESALKTPQPGVAPYKPLPPR
ALYLTPNEWKSRLEALSVARLTPFAQPDSPERAVIDCGAQAGRNFAPERANEAASVFDAA
VAHIRALQGSGHHVILGSWSEGSRDRLCAVLTDHGLKKPIEINTLTAVNALKRGTDVAVA
VWGLEAGFTIDRLAVIAEGDILGDRLVRQKRKSKRPQDVILEVQALQPGDLVVHADHGIG
RFVTLKTVHAAGAPHDCLELQYTGGLLLLPVENIELLTRYGSEDSEVALDRLGGGAWQAR
KAKMKRRILEMAGELIKVAAARFVKPAPALKAPEGLYEEFAARFAFQETEDQANAIDAVL
DDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPTTLLARQHYRTFAERF
KGLPVNVAQLSRFVSAGEQRQTRAGLAEGKVDIVVGTHALLAKNVAFKDLGLIIVDEEQH
FGVAHKERLKALQAEVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPF
DPLLIREALLRERYRGGQSFYVVPRIEDLAEVKRFLDQEMPETTVAVAHGQMAAGQLEDV
MTAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYAL
FTTPANRQLTAQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYE
LYQQMLEDAVTALKAGIAEPEAEAWSPTIAMGAPVTIPESYVEDLTVRLGLYRRLSTLEN
DQELESFGAELIDRFGPLPGEVEQLLKIVTIKILCREANVEKVEAGPKGIVVQFRDRAFA
NPQGLAAFVVEQGSFAKVRPDMSVVFIRELDSVPERLKVTTQILRNLVKIAARGGKKAA
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccgaagcccccagccccacagcccgccccgaagccgcagaccgcccgcttc
gccctgccgaaatcggcgccgctgacccaggcgctggaggcgctcaagcgcggggacagc
ccgacgctcgccagcgtgccggagggtttcgacaccctggtcgccgccgatctcgcccgc
gccctgtcgggcagcttcgaggggccggcggtgctggtccacgtcgcgcgggattccggc
cgctccaacgcctttcagaccgccctgaaattcgtcgcccccgagatcgaggtgatgagc
ttcccggcctgggactgccagccctacgaccgggtctcgccgaacgcggccatcgccgcc
cagcgcatgacggcgctctcgcggctgacccgctcgcgctcctcggaggagaagccccgc
atcctctgcaccacggtgaacgccatggtgcagcgggtgccgccccgggaccgggtcgcg
gtcgagaccttctcggcggcgatcggcaacgtggtgccgatggacaaggtcgtggcctgg
gtcgaggccaacggcttcctccgcacggggacggtgcgggacaccggcgaatacgccgtg
cgcggcggcatcctcgacctgtcgccgccgggtctgcccaacccgatccgcctcgacttc
ttcggcgacacgctggagacgatccgcgccttcgatcccgagacccagcgcacggtgggc
tccctgcgctccctcgacctcgtgccgatgagcgaggtgcagctcaccaccgagacgatc
cggcgcttccgccagggctatctcacgagcttcggcgcggccaaccgggacgaccgcctc
tacgagacggtgagcgaggggcggcgctatgccggcctcgagcactggatgccgctgttc
tacgagagcctcgacaccctgttcgactatctcggcgacgtgcccttcctgttcgacgcg
caggtggaggatgccgccgccgagcgcttcgccctggtccaggactatttccaggcccgc
gagagcgccctgaagacgccccagcccggggtcgccccctacaagcccctgccgccccgc
gctctctacctgacgcccaacgagtggaagagccggctcgaagccttgagcgtggcccgg
ctcacccccttcgcccagccggattcccccgagcgcgcggtgatcgattgcggcgcccag
gccgggcgcaacttcgcgccggagcgggcgaacgaggcggcgagcgtgttcgacgccgcg
gtcgcgcatatccgcgcgctgcagggatccgggcatcacgtgatcctcggatcctggtcc
gagggctcccgcgaccggctctgcgccgtgctgaccgatcacggcctgaagaagccgatc
gagatcaacaccctgaccgcggtcaacgcgctcaagcgcggcaccgacgtggcggtggcg
gtctggggcctggaggccggcttcaccatcgaccgcctcgcggtgatcgcggagggcgac
atcctcggcgaccggctggtgcgccagaagcgcaagtcgaagcggccgcaggacgtgatc
ctggaggtgcaggcgctccagcccggcgacctcgtcgtccatgccgatcacggcatcggc
cgcttcgtcaccctgaagaccgtgcacgccgcgggcgccccgcacgattgcctggagctg
caatataccggcggcctgctgctgctgccggtggagaacatcgagctcctgacccgctac
ggctcggaggattccgaggtcgccctcgaccgcctcggcggcggggcttggcaggcccgc
aaggccaagatgaagcgccgcatcctcgagatggccggcgagctcatcaaggtggccgcc
gcccgcttcgtgaagcccgcccccgccctcaaggcgccggaggggctctacgaggaattc
gccgcccgcttcgccttccaggagaccgaggaccaggccaacgccatcgacgcggtgctc
gacgacctcaatgccggccgcccgatggaccgcctggtctgcggcgatgtcggcttcggc
aagaccgaggtggctttgcgcgccgccttcgccgcggcgatctccggcaagcaggtcgcc
gtggtggtgccgacgacgctcctcgcccgccagcattaccggaccttcgccgagcgcttc
aaaggcctgcccgttaacgtggcccagctctcgcgcttcgtctcggccggcgagcagcgc
cagacccgggccgggctcgccgagggcaaggtcgacatcgtggtcggcacccacgccctg
ctcgccaagaacgtggcgttcaaggatctcggcctcatcatcgtcgacgaggagcagcat
ttcggcgtggcccacaaggagcggctcaaggcgctccaggcggaggtccacgtgctgacc
ctctccgccaccccgatcccgcgcacgctccagctcgccatgaccggggtgcgcgagctc
tcgatcatcgccacgccccccgtggaccggctcgcggtgcgcaccttcgtgacgccgttc
gatccgctgctgatccgcgaggcgctgctgcgggagcgctatcgcggcggccagtccttc
tacgtggtgccgcgcatcgaggacctcgccgaggtcaagcgcttcctcgatcaggagatg
cccgagaccacggtggccgtggcccacggccagatggcggcgggccagctcgaggacgtg
atgaccgccttctacgagggcaagtacgacgtgctgctctcgaccacgatcgtcgaatcg
ggcctcgacatccccaccgccaacacgctgatcgtgcaccgggccgacatgttcggcctc
gccgcgctctatcagctgcgcggccgcgtcggccgctccaaggcccgcgcctacgccctg
ttcacgaccccggccaaccgccagctcaccgcccaggccgagcagcgcctcaaggtgctc
cagagcctcgacaccctgggcgcgggcttccagctcgcctcccacgacctcgacatccgc
ggcgccggcaacctcctcggcgacgctcagtccggccacatcaaggaagtgggctacgag
ctctaccagcagatgctggaggatgcggtgaccgcgctcaaggcgggcatcgcggagccg
gaggcggaggcctggtcgccgaccatcgccatgggcgcgccggtcacgatccccgagagc
tacgtggaggacctcaccgtccgcctcggcctctaccggcgcctctcgaccctcgagaac
gaccaggagctcgagagcttcggcgccgagctgatcgaccggttcgggccgttgcccggg
gaggtggagcagctcctcaagatcgtgacgatcaagatcctgtgccgggaggccaatgtc
gagaaggtggaggcgggcccgaagggcatcgtcgtccagttccgcgaccgtgccttcgcc
aacccgcaggggctcgccgccttcgtggtggagcagggctccttcgccaaggtgcgcccg
gacatgagcgtcgtcttcatccgcgagctcgattcggtgcccgagcgcctgaaggtgacg
acgcagatcctgcgcaacctcgtgaagatcgcggcccgcgggggcaagaaggcggcctga
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