Methylobacterium organophilum: MMB17_21465
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Entry
MMB17_21465 CDS
T08093
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mog
Methylobacterium organophilum
Pathway
mog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMB17_21465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mog03019
]
MMB17_21465
03009 Ribosome biogenesis [BR:
mog03009
]
MMB17_21465
Enzymes [BR:
mog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MMB17_21465
Messenger RNA biogenesis [BR:
mog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MMB17_21465
Ribosome biogenesis [BR:
mog03009
]
Prokaryotic type
rRNA processing factors
MMB17_21465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UMY17181
LinkDB
All DBs
Position
4545207..4548164
Genome browser
AA seq
985 aa
AA seq
DB search
MANNKMLIDATHPEETRVVTVHGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEAEHNEREERRSRGRRSRGRRAE
AASARSDETVSAGDAAEDTVEAAAETTAEITVDVAAEGTPVASAAPDEAAVPAESEAAEA
GETAAALPESVIPPAPEPAPAVSDAPESPAGETSAEAAPEPVVAAAEESVAEETASEETA
SEGEDSDEDASDEDDEEDEDESDDESDEESDDEDDEDSDDEESEDEDGEPKIAQVGGAGD
ALAEIPERPRPYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPN
TGRGGGISRKITSAADRKRLKEVVADLDVPEGMGVILRTAGASRTKPEIKRDFEYLMRLW
ESVRELTLASTAPALVYEEGSLIKRAIRDLYNKDIDEVLVSGPDAYREAKDFMRMLMPQQ
SKVVKPYTEQTPIFARHGVEQQLDAMFSTHVALKSGGYLVINPTEALVSIDVNSGRATRE
HDIEDTALKTNLEAAEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRA
RIQVGRISPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEALL
KSSTHNLILRTRTEVALYILNQKRAHLRDLELRFGVSITIAADERLAATAAFQLDRGELA
VRDAAPATGVRAAVVSPVYELEEEAEDEESAEGEVEAGEDEEGAEARDTASNDEGNRRRR
RRRRRRGGRAGQDDGPRAEGQDDGESDEEDGQEEPQDARSDELRDEEGGESAGPSGEEAD
EPAAPAEAGGNGEGGNGRRRRRGRRGGRGRERGERESQDGAEGDEAAAALSAEEPVEAEA
IEAVAADLGTTDPDTAGQTAVELPVAEAEVAAVVAPPAADAEPEKTEPAPEPAPEPVAVV
LTPADPNRPKRAGWWSRTKAALTGE
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgacgcatccggaggagacccgggtcgtcacg
gtccacggttctagggtcgaggagttcgacttcgaggccgccaaccgccggcctctgcgt
ggcaacatctatctcgccaaggtgacgcgggtggagccttcgctccaggccgccttcgtg
gagtatggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgaccgcctcgccctgatcgaggcggaggcgcgcgaggaggcggag
cacaacgaacgcgaggagcgccgctcgcggggccggcggtcgcgcggccgccgggccgag
gccgcctccgcccgctccgacgagaccgtgagcgccggcgacgcggccgaggacacggtc
gaggccgccgccgagaccaccgccgagatcacggtggacgtggccgcggagggcacgccc
gtcgcgtcggccgcgcccgacgaggcggccgttcccgccgaatccgaagcggccgaggcc
ggcgagaccgccgcggcgcttccggaatccgtgatcccgcccgcccccgagccggcgccc
gccgtgtccgacgcgccggagagccccgcgggcgagacgtccgccgaggcggcgcccgag
ccggtggtcgctgccgccgaggagagcgtcgccgaggagaccgcctccgaagagaccgct
tccgagggcgaggactccgacgaggacgcctccgacgaggacgacgaagaggatgaggac
gagtcggatgacgaatccgacgaggagtccgacgacgaggacgatgaggactccgacgac
gaggagtccgaggacgaggacggcgagcccaagatcgcccaggtcggcggcgcgggcgac
gcgcttgccgagatcccggagcgtccccgcccctatcgccgccactacaagatccaggag
gtgatcaagcgccgccagatcatcctcgtccaggtcgtcaaggaggagcgcggcaccaag
ggcgcggcgctgaccacctatctgtcgctcgccggccgctactccgtgctgatgccgaac
accggccgcggcggcggcatctcccgcaagatcacctccgccgccgaccgcaagcgcctg
aaggaggtcgtggccgatctcgacgtgccggaggggatgggcgtcatcctgcgcacggcg
ggcgcctcgcgcaccaagccggagatcaagcgcgacttcgagtacctgatgcgcctgtgg
gaatcggtgcgcgagctgacgctcgcctccaccgccccggcgctggtctacgaggagggc
tcgctgatcaagcgggcgatccgcgacctctacaacaaggacatcgacgaggtcctcgtc
tccggccccgacgcgtatcgcgaggccaaggacttcatgcggatgctgatgccgcagcaa
tccaaggtcgtgaagccctataccgagcagacgccgatcttcgcccgccacggcgtcgag
cagcagctcgacgcgatgttctcgacccacgtggcgctgaaatccggcggctacctcgtc
atcaatccgaccgaggcgctcgtctcgatcgacgtgaattcgggacgcgccacccgtgag
cacgacatcgaggacacggcgctgaagacgaacctggaggcggccgaggaggtcgcccgg
caggtgcgcctgcgcgatctcgccggcctcgtcgtgatcgacttcatcgacatggaggag
aagcgcaacaaccgggcggtggagaagcgcctcaacgaggccctcaagaacgaccgggcc
cgtatccaggtcggccggatctcgcccttcggcctcctcgagatgagccgccagcgcatc
cgcaccggcgtgctcgaatcctcgtcgatcccctgcgcccattgcggcggctcgggcttc
gtgcgcgcgacctcctcggtggcgctgcacatcctgcgctcgatcgaggaggctttgctc
aagtcctcgacccacaacctgatcctgcgcacccgcaccgaggtggcgctctacatcctc
aaccagaagcgggcgcatctgcgcgatctggagctgcgcttcggcgtcagcatcacgatc
gccgccgacgagcggctcgctgccaccgccgccttccagctcgatcgcggcgagctcgcg
gtccgcgacgcggcgccggccaccggcgtgcgcgcggcggtggtctccccggtctacgag
ctcgaggaggaggccgaggacgaggagagcgccgagggcgaggtcgaggccggcgaggac
gaggagggcgccgaggcgcgcgacaccgcgtccaacgacgagggcaaccgccgccgtcgc
cgtcgccgtcgccgtcgcgggggccgtgccggccaggacgacgggccgcgcgccgagggc
caggacgacggcgagtccgacgaggaggacggccaggaggagcctcaggacgcccgctcc
gacgagctccgggacgaggagggcggcgagtccgccggcccctccggggaggaggccgac
gaaccggccgcgccggccgaggccggcggcaacggcgagggcggcaatggccgccgccgc
cgacgcggtcgccggggcggccggggccgggagcgcggcgagcgcgagtcccaggacggg
gccgagggcgacgaggcggccgctgccctgtcggcggaggagccggtcgaggccgaggcg
atcgaggcggttgctgccgatctcggcaccacggatcccgacacggccggccagacggcg
gtcgagctgccggtcgccgaggccgaggtcgccgcggtggtcgcgccgccggccgcggat
gcggagcccgagaagaccgagcccgcgcccgaaccggcccccgagccggtcgcggtggtg
ctcaccccggccgatcccaaccggcccaagcgggccggctggtggtcccgcaccaaggcg
gcgttgacgggcgagtaa
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