Mesorhizobium onobrychidis: IHQ72_03415
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Entry
IHQ72_03415 CDS
T08462
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
moh
Mesorhizobium onobrychidis
Pathway
moh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
moh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IHQ72_03415 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
moh03400
]
IHQ72_03415 (ligD)
Enzymes [BR:
moh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IHQ72_03415 (ligD)
DNA repair and recombination proteins [BR:
moh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IHQ72_03415 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UVC16242
LinkDB
All DBs
Position
complement(711195..713717)
Genome browser
AA seq
840 aa
AA seq
DB search
MASLEQYHAKRDFKKTAEPTGKVVRNRKGEAGGIFVVHKHAATRLHYDLRLEHGGVLWSW
AITRGPSLDPHEKRFAVHVEDHPIDYASFEGTIPKGEYGGGSVIVWDEGKWQPENDPAQA
MKKGHISFELHGHKLNGLWHLVRLKPRPGKTRDNWLLIKSDDAAARPGEDILQEAPESVK
SGLTIEEVGEGKTADGKKPRVWHSNKRSTSKAKAKAAKQLEFIEPCLATLQRDAPPGKEW
LHEVKFDGYRMQAQLAGTKARLLTRTGLDWTGKFGGAIVAELGRLKCTDAIIDGEIVVLA
DSGVSSFALLQADLSAGRTDRFLYYVFDLIRLDGQDLRREPLVERKQALQDLLGKQPDNS
AVRFSDHFAEPGKVMLEHACRMGLEGIVSKRADAPYRSGRGLSWVKSKCTLRQEFVIGGF
LPSEKTGRGLRSLLVGYHEGGKLHYAGRVGTGFSMQSTNDLKKKLDARRAETSPFDTAVP
KGKGSGKGVVWVKPELVGEVEFRTWTSDRIIRHASFQGLREDKPAEEVVQEKPKADTKAK
PAGGKGETKVKSTRAAKTVVKLSHPDKLLWPQEKVSKHGLLDHYASVWPRMKQFVVNRPL
SLVRAPDGVGGQRFFQKHASAGMHDKIARMKDPTDGEEILFIRDFDGVAALVQLGVVEIH
IWGCTIDELDKPDQIIFDLDPDEGVDVKAVRAAALEIHGRLDALSLPNFVKTSGGKGYHV
VVPLKPSADWDEVKDFAHDFARALEQAAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVA
PYSSRAKKGATVSMPATWAEIEAGLAPNAFPIGDKTTLKQLAKPDPWADFFKQGKPLKRG
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggccagccttgagcagtatcacgccaaacgcgatttcaagaagaccgccgagccgacc
ggcaaggtcgttcgcaacaggaaaggtgaggccggcggcatctttgtcgtccacaagcac
gccgcgacacgactgcattacgaccttcgcctggagcatggtggcgtgctgtggagctgg
gcgataacccggggtccgagcctcgatccgcatgaaaagcggttcgccgtgcatgtcgag
gatcacccgatcgactacgcgtccttcgaaggcaccattcccaagggcgaatatggtggc
ggctcggtcatcgtctgggacgaaggcaaatggcaaccggagaacgatccggcccaggcg
atgaaaaagggccatatcagcttcgaattgcacggccacaagctgaacggtctctggcat
ctggtgcggctgaagccgcgtccgggcaaaacgcgcgacaattggctgctgatcaaatcc
gacgatgccgccgcgcgcccaggtgaggacatcttgcaggaggcgcccgagtcggtgaag
tcgggcctgacgatcgaggaggttggcgaaggcaagaccgccgatggcaagaagccaagg
gtctggcattcgaacaaacggtccaccagcaaggcgaaggccaaggcggcaaagcagctc
gagttcatcgaaccatgcctcgccacattgcagagggatgcccctcccggcaaggaatgg
ctgcatgaggtgaaattcgacggctaccgcatgcaggcgcaacttgccggcacaaaggcg
cggctgttgacgcgcaccggcctcgactggacgggcaaattcggcggcgcgattgttgca
gaactcgggcgtctgaaatgtaccgacgccatcattgacggcgagatcgtcgtgctggca
gacagcggcgtctcgtctttcgcgctgctccaggctgacctgtcggccggccgcacggat
cgttttctctattacgtcttcgacctgatccgtctcgacggccaagacctgcgcagagag
ccgctggtcgagcgcaagcaggctttgcaggatttgcttggcaaacagccagacaattct
gcagtccgcttcagcgaccattttgccgaaccgggcaaggtcatgctggagcacgcctgc
cgcatggggttggaaggcatcgtctccaagcgcgccgacgcgccctatcgcagcggccgc
ggcttgtcctgggtgaagtcgaaatgcacgctgcgccaggagttcgtcatcggcggcttc
ctgccgtcggagaagaccgggcgcggattgcgctccttgctggtcggctaccatgagggc
ggcaagctgcactatgccggccgtgtcggcaccggtttttcgatgcagagtaccaacgac
ctgaagaaaaagttggatgcgcgaagggcggagacctcgcccttcgatacagccgtaccg
aaaggcaaggggtcgggcaaaggagtggtttgggtgaagcccgaacttgttggcgaagtg
gagttccgtacctggacgtccgatcgtataatacgtcacgcctcgttccagggattgcgc
gaggacaaaccggcggaggaagtcgtgcaggaaaagccgaaggccgacaccaaggcaaag
ccggccggcggcaaaggcgagaccaaggtcaagtctacccgggcggcaaaaaccgtcgtt
aagctttctcaccccgacaagcttctgtggccgcaggagaaggtctcgaagcatggcctg
ctcgatcactatgcctcggtctggccacgcatgaagcagtttgtggtcaaccggccgctc
agcctggtgcgcgcgccggacggcgtcggcggccaacgcttcttccagaaacatgcgtcg
gccggcatgcatgacaagatcgccaggatgaaggatccgacggacggcgaggagatcctg
ttcatccgcgatttcgacggtgtcgctgccttggtccagctcggcgtggtcgagatccat
atctggggctgcaccatcgacgaactggacaagccggaccagatcatcttcgatctcgat
cccgacgaaggcgtcgacgtgaaagcggtgcgcgcggcggcgctcgaaattcacggccgg
ctcgatgcgctgtcattgccgaatttcgtcaagacgtcgggcggcaagggctaccatgtc
gtcgtgccgctgaaaccgtcggcggattgggatgaggtgaaggacttcgcccatgatttc
gcccgcgccctcgagcaggccgcccctgatcggtatacagcgacgctgtcgaagaaggcg
cgcaccggcaagatcttcgtcgactatctgcgcaatggccgcggctcgaccacggtggca
ccctattcgtcgcgcgccaagaaaggcgctacggtctcaatgccggcgacctgggcggag
atcgaggccgggttggcgccgaacgcctttccgatcggcgacaagacgacgctgaagcag
ttggcgaaacccgatccctgggcagattttttcaagcagggcaagccgctcaagcgcggc
tga
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