Mesorhizobium onobrychidis: IHQ72_19860
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Entry
IHQ72_19860 CDS
T08462
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
moh
Mesorhizobium onobrychidis
Pathway
moh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
moh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IHQ72_19860 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
moh03019
]
IHQ72_19860 (rnr)
03016 Transfer RNA biogenesis [BR:
moh03016
]
IHQ72_19860 (rnr)
Enzymes [BR:
moh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IHQ72_19860 (rnr)
Messenger RNA biogenesis [BR:
moh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IHQ72_19860 (rnr)
Transfer RNA biogenesis [BR:
moh03016
]
Prokaryotic type
tRNA degradation factors
IHQ72_19860 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UVC13013
UniProt:
A0ABY5QPS4
LinkDB
All DBs
Position
complement(4025621..4027927)
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AA seq
768 aa
AA seq
DB search
MARRVSGRSHGDLRTADTRAKVKDNYRPSRDEILRYIAENPDRSGKRDIAKAFALRGEDR
IWLKDILRDLQEEGLLTKERKRLARVGALAHVAVLDIFGRDADGVLLAHPTEAVGNGEPP
VIAIRVSRGGGGPTPGIGDRVLAKTFPTDDVTGPAYTGRVMKIFEKRTDAVLGVFRVLQD
GTFRIEPVERRQPELIVDKEFQNGAKNGDLVEVEPARASRYGLPRAKVLAVLGSLTSEKA
VSMIAIHAHDIPHIFPADVIAEAAAVKPATLAGREDWRELPLVTIDPADAKDHDDAVFAI
SDPDEKNPGGVVVTVAIADVAAYVHYGTALDREALKRGNSVYFPDRVVPMLPERISNDLC
SLREGQDRPALAVRMTFSADGRKLRHSFHRIMMKSAAKLAYPQAQAAIDGAPDDKTGPIL
GTVLKPLWDAYAVVKRGRETRQPLELELPERKILLKEDGTVDRVVVPERLDAHKLIEEFM
IQANVAAAETLEAKRQALVYRIHDAPSLAKQESLREFLQTLGLSLARGAQMRPNQFNGIL
DRVRGADHEGLVNEVVLRTQMQAEYSPSNIGHFGLNLKRYAHFTSPIRRYADLIVHRGLI
AALGFGAGGLTQDEAERLEEVSALISATERRAMAAERDTVDRLIAAYLAERVDDRFDARI
SGVTKSGLFVQLPQYGADGFIPVSSLEGDYYIYDETARSLFGERTGKGYQLADRVEVRLI
EVAPMAGAMRFEMLTDPKPLPGSKRSFHKAKDRARASQSRPGSRGRRR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgcagggtatccggaagaagtcatggcgatctgcgcaccgccgacaccagggcc
aaggtcaaagacaactaccgcccgtcccgcgacgaaattctgcgctacatcgccgaaaac
ccggatcgctccggcaaacgcgacatcgccaaggcgtttgcgctgcgcggcgaggaccgt
atctggctgaaggacattttgcgcgacctgcaggaagaagggctgctgaccaaggagcgc
aagcggctcgctcgtgtcggcgccctggcccatgtcgccgtgctcgacatctttggccgc
gacgccgacggcgtgctgctggcgcacccaaccgaggccgtgggcaacggcgagccgcct
gtcatagcgatccgcgtgtcgcgcggcggcggcggcccgacaccgggcatcggcgaccgc
gtgctggccaagacctttccgaccgacgatgtgactggccctgcctataccgggcgggtg
atgaagatattcgagaagcgcaccgatgccgttctcggcgtcttccgcgtgctgcaggac
ggtaccttccgcatcgagcctgtcgaaagacgccagccggagctgatcgtcgacaaggaa
ttccagaacggcgccaagaatggcgatctggtcgaggtcgagccggcacgggcctcccgc
tatggactgcccagagccaaggtgctggcggtgctcggttcgctgaccagcgaaaaggcg
gtctcgatgatcgccatccacgcgcatgacattccgcatattttcccggcagacgtcatt
gccgaggcggcggcggtcaaaccggcgacgctggccggccgcgaggactggcgcgagctg
ccgctggtcaccatcgatccggccgacgccaaggaccatgacgatgcggtgttcgccata
tcggatccggacgaaaagaaccccggcggcgtggtcgtcaccgtggcgattgccgatgtc
gccgcttatgtgcactatggcaccgcgctcgaccgcgaggcgctgaagcgcggcaattcg
gtctatttcccggatcgcgtcgtgccgatgctgccggagcgcatctccaacgacctttgt
tcgctgcgcgaaggccaggaccgcccggcgctggccgtccgcatgactttctcggccgat
ggccgcaagctcaggcattcgttccaccgcatcatgatgaagtcggcggcgaaactcgcc
tatccgcaggcgcaggccgcgatcgacggcgcgccggacgacaagaccggcccgatcctc
ggcacggtgctgaagccgctgtgggacgcctacgccgtcgtgaagcgcggccgtgagacg
cgccagccgctcgagcttgaactgcctgagcgtaaaatcctgctcaaggaggacggcact
gtcgaccgcgtcgtcgtgccggagcggctcgatgcgcacaagctgatcgaagaattcatg
atccaggccaatgtcgcggccgccgagacgctggaggcgaaacggcaggcgctggtctac
cgcatccatgacgcgccttcgctcgccaagcaggaatcgctgcgcgaattcctgcagacg
cttggcctgtcgctggcacgcggggcgcagatgcgaccgaaccagttcaacgggattctg
gatcgcgtccgcggcgccgaccatgagggactggtcaacgaggtggtgctgcgcacgcag
atgcaggccgaatattcgcccagcaacatcggccatttcggcctcaatctgaaacgctac
gcgcattttacctcgccgatccgcagatatgccgacctgatcgtgcatcgcgggctgatt
gccgcgctcggcttcggtgcgggcggactgacgcaggatgaggcggagcggctggaagaa
gtttctgcgctgatctcagccaccgagcgccgcgccatggctgccgagcgcgatacggtc
gaccggctgatcgccgcctatctcgccgagcgtgtcgacgatcgtttcgatgcgcgcatt
tcgggcgtcaccaaatcgggactatttgtccaattgccgcagtatggcgcagatggtttc
atcccggtgtcaagcctggagggcgattactacatatacgacgaaactgcccgatcgctt
ttcggagaacgcactggcaagggctaccagcttgccgaccgcgtcgaggttcgcctgatc
gaggtggcgcctatggccggcgcgatgcgtttcgagatgctgaccgacccgaagccgctg
cccggctccaaacggtcgtttcacaaggccaaagaccgcgcccgtgcgtcgcaatcgcgt
ccaggctcgcgcggcaggagacggtaa
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