Microbacterium oryzae: D7D94_04830
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Entry
D7D94_04830 CDS
T09900
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
moj
Microbacterium oryzae
Pathway
moj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
moj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D7D94_04830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
moj03400
]
D7D94_04830
Enzymes [BR:
moj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D7D94_04830
DNA repair and recombination proteins [BR:
moj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D7D94_04830
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QGU27062
LinkDB
All DBs
Position
1038629..1041037
Genome browser
AA seq
802 aa
AA seq
DB search
MPAAPQTVEVAGRRLRVSNLERVMYPETGTTKADVIAYYTRIAPLLLPHVAGRPVTRKRW
VEGVGTADAPEESFFAKALEPGAPSWVPRRAIPHSTGPKDYPLVEEVASLVYLAQVASLE
LHVPQWRFTAAGEPGPADRLVLDLDPGPGMGLAECAEVARLIRPILAGMGLEAHPVTSGS
KGIHLYAALPQPMPSDSASALAHELARALEADHPDLVVSAMRKDLRAGRVFVDWSQNNGK
KTTVAPYSLRGRSRPSVAAPRTWEEIDDPELRHLELDEVLARAESLGDPLAEVDALPVEH
GPLRSYIAKRTAGRTPEPVPETPHAEPPHAGELPRFVVHEHHASRLHWDLRLERDGVLAS
WAVPKGIPETPERNHLAVRTEDHPLAYIDFHGTIPKGEYGAGTMTVWDTGTYETEKWRDR
EVIVTLRGREDGPLHEVRIALIRTQGEGEKASWLLHRTKQQPTQQPGHQPDSSDQDAGDP
PPQRPAPMLAVHGTPGLARTLSDPPWAEFKWDGVRALAEWRSGALRLFARSGTEITHRYP
ELSEPARTHVDGWDALLDGEIVALDEQGRPSFSLLQNRMHLERGDDIARERGRVPALLYL
FDILRLDGRDLTALPLEERRAILERVTATAGPTVVVPPVLDDVDLALDVAQEHGLEGVVA
KRRSSPYRAGTRSEDWLKLKLTRMQEAVIGGFRRGRGARSDSFASLLLGIPEADGLRYVG
RVGSGFSERELHRIRTTLAPLCADASPFLDVPREDAADATWVTPTLVGEVEFAEWTRSGN
LRQARWRGLRPDKSPDDVRREA
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgccccgcagaccgtcgaggtggccgggcgacgcctgcgggtgtcgaacctc
gagcgggtgatgtacccggagaccggcacgacgaaggccgacgtcatcgcgtactacacc
cgcatcgccccgctgctgctgccgcacgtggcggggcggccggtgacgcgcaagcgctgg
gtggagggcgtgggcacggcggacgcaccggaggagtcgttcttcgccaaggcgctggag
cccggcgccccgtcctgggtgccgcgccgggccattccgcacagcacgggtccgaaggac
tacccgctcgtcgaggaggtcgcctccctcgtgtacctcgcgcaggtggcgagcctcgag
ctgcacgtgccccagtggcggttcacggcggccggcgagccgggacccgccgaccgcctc
gtcctcgacctcgatccgggccccggcatgggcctcgcggagtgcgcggaggtcgcgcgc
ctcatccgccccattctggcggggatggggctcgaggcgcaccccgtgacgagcggcagc
aaggggatccacctctacgccgcgctcccccagccgatgccgtccgacagcgcgtccgcc
ctcgcgcacgagctcgcccgcgcgctcgaggccgaccaccccgacctcgtcgtgagcgcg
atgcggaaggacctccgcgcggggcgcgtgttcgtcgactggagtcagaacaacgggaag
aagacgacggtcgccccgtactcgctgcggggacgctcccgcccctcggtcgcggctccc
cgcacctgggaggagatcgacgaccccgagctccgtcacctcgagctggacgaggtgctc
gcccgcgccgagtcgctgggcgaccccctggccgaggtcgacgctcttcccgtcgagcac
ggaccgctgcggtcgtacatcgccaagcgcacggccggccgcacgcccgagccggtgccg
gagaccccgcacgccgagcccccgcacgccggcgagctgccccgcttcgtcgtgcacgag
catcacgcgtcgcggctccactgggacctgcgcctcgagcgcgacggggtgctggcgagc
tgggcggtgccgaagggcatcccggagaccccggaacgcaaccacctcgcagtgcggacg
gaggaccatcccctcgcgtacatcgacttccacgggacgatcccgaagggcgagtacggc
gcgggcaccatgaccgtctgggacaccggcacgtacgagaccgagaagtggcgcgaccgc
gaggtcatcgtcaccctgcgcgggcgcgaggacggcccgctgcacgaggtgcggatcgcc
ctcatccgcacgcagggcgagggcgagaaggcctcgtggctcctgcaccgcacgaaacag
cagcccacgcagcagcccgggcaccagccggactcgtccgatcaggatgctggcgatccg
ccgccgcagcgcccggcgcccatgctcgccgtccacggcacgccgggcctcgcgcgcacg
ctgtccgacccgccgtgggccgagttcaagtgggacggcgtgcgcgccctcgccgagtgg
cgctcgggcgccctgcgcctgttcgcgcgctcgggcaccgagatcacgcaccgctacccg
gagctgtccgagcccgcccgcacgcacgtcgacggctgggacgcgctgctcgacggcgag
atcgtcgcgctcgacgagcagggcaggccgagcttctcgctcctgcagaaccggatgcac
ctcgagcgcggcgacgacatcgcccgcgagcgcgggcgcgtgccggcgctgctgtacctg
ttcgacatcctgcgcctggatggccgcgatctcaccgccctccccctcgaggagcgccgc
gccatcctcgagcgcgtcacggcgacggccggcccgacggtggtcgtgcctcccgtcctc
gacgacgtcgacctcgccctggacgtcgcgcaggagcacggcctcgagggggtcgtcgcg
aagcggcgctcctcgccctaccgcgccggcacccgcagcgaggactggctgaagctcaag
ctcacccgcatgcaggaggccgtgatcggaggcttccgccgcggccgcggcgcgcgctcg
gactcgttcgcctcgctgctcctcggcatccccgaagcggatggcctgaggtacgtcggc
cgtgtcggcagcggcttctcggagcgggagctgcaccggatccgcacgacgctcgctccg
ctgtgcgcggatgcgtcgccgttcctcgacgtgccccgcgaggacgccgccgacgcgacc
tgggtgacgcccacgctggtgggagaggtggagttcgcggagtggacgcgcagcggcaat
ctgcggcaggcgcgctggcgcggactgcgacccgacaagagcccggacgacgtccgacgg
gaggcgtga
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