Microbacterium oryzae: D7D94_07945
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Entry
D7D94_07945 CDS
T09900
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
moj
Microbacterium oryzae
Pathway
moj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
moj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D7D94_07945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
moj03021
]
D7D94_07945 (rpoC)
03400 DNA repair and recombination proteins [BR:
moj03400
]
D7D94_07945 (rpoC)
Enzymes [BR:
moj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D7D94_07945 (rpoC)
Transcription machinery [BR:
moj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D7D94_07945 (rpoC)
DNA repair and recombination proteins [BR:
moj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D7D94_07945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
UDPG_MGDP_dh_C
Motif
Other DBs
NCBI-ProteinID:
QGU27605
UniProt:
A0A6I6DRP6
LinkDB
All DBs
Position
complement(1700221..1704096)
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDATTFDELRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEARHRDMPTHENNLRLEIKNLNDRRDSRIAARLQKLEEE
LAALEAEDAKADQKKKVRDAAEKEMATIRKRADESIAKLERMWEEFRSLKVGELKAEDDV
FQELQDRFGQYFDAHMGAEAIQRRLAEFDLPAEAESLRNQIAEGKGQRKIRAIKRLKVVQ
SFITTGMSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRSVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHITTLKDGAKGEGR
VFGSVWEAQLAKEEGTLDLQAKVRIRVPGLTFLEGQAPEGYEKHGLVDTSLGQAIFNDQL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVVVAETLDKIKDAGFHWATRSGVTVALSDVL
TPPNKGEIVARYEQQAAKVTAQYEKGLTTDDERRTELVRIWTEATDEIQKEMRANFPEDN
TINRMVSSGARGNWLQIRNIAGIRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTSKGLEYPIAEADANGVLVRDANVE
NSVFARSLAVDVVAEDGTVLAQAGQDVGDVLIDSLVEAGVTSIKVRSVLTCDSAVGVCAR
CYGRSLATGNLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEADGRITIEETEKQKKVILTPDSGDEQVVYPVLKRATLLVEDGQHVKV
GDSIQVGTLDPKEIMRVQGAREVQKYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGETDLLPGEMVDMRRYQDINRAAIAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTEAAMQGKRDPLIGLKENVIIGKLIPAGTGLSKYRDVVVEATEEAKTERYPNRI
FASDGAYAEGDYSFVDFDAFTTDDFTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgcaacaactttcgatgagcttcgcatcggcctggccaccgccgacgacatc
cgtcgttggtccttcggtgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
ccggagaaggacggcctcttcggcgagcagatcttcggtcccagccgggactgggagtgc
gcctgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagagctccgtccgccgcgagcgcatgggccacatcgagctcgccgccccc
gtgacgcacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtcatctcggtcgac
gaggaggcgcgtcaccgcgacatgccgactcacgagaacaacctgcgtctcgagatcaag
aacctgaacgaccgtcgtgactcgcgcatcgcggctcgcctccagaagctggaggaggag
ctcgccgctctcgaggccgaggacgccaaggcagaccagaagaagaaggtccgcgacgcc
gccgagaaggagatggcgaccatccgcaagcgtgcggatgagtccatcgccaagctcgag
cgcatgtgggaggagttccgctccctcaaggtcggcgagctcaaggcggaggacgacgtc
ttccaggagctccaggaccgcttcggccagtacttcgacgcgcacatgggcgccgaggcc
atccagcgccgtctggcggagttcgacctccccgcggaggccgagtcgctgcgcaaccag
atcgccgagggcaagggccagcgcaagatccgtgcgatcaagcgcctgaaggtcgtccag
tccttcatcacgaccggcatgtcgccggccgcgatggtgctcgacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcaacgagcgacctg
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctgcgccgccttctcgacctc
ggggctcccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcacgggcaccggcaaccgcgccctgaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcgtcgtaggtccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtcatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggccgcgaagcgctccgtcgagcgcacgcgt
cccgaggtgtgggacgtgctcgaggagatcatccgcgagcgtccggttctgctgaaccgt
gcgcccacgctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtctgcgcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtcggtcgaggctcaggctgaggcgcgcgtgctcatgctc
gcgtcgaacaacatcctgaagccgtcggacggccgtccggtgaccctgccctcgcaggac
atgatcatcggtctgcaccacatcacgacgctgaaggacggcgccaagggtgagggccgc
gtgttcggctcggtgtgggaggcgcagctcgccaaggaagagggcaccctcgacctgcag
gcgaaggtccgcatccgcgttcccggcctcacgttcctcgagggccaggcgcccgagggc
tacgagaagcacggcctcgtcgacacctcgctcggccaggcgatcttcaacgaccagctg
ccgaagggctaccccttcgtgcgcgagcaggccgacaagggcaagctctcgcagatcgtg
aacaagctggccgaggagtaccccaaggtcgtcgtggcggagacgctcgacaagatcaag
gacgccggcttccactgggccacccgctcgggtgtcacggtcgccctgtccgacgtgctc
acgcccccgaacaagggcgagatcgtcgctcgctacgagcagcaggccgccaaggtcacc
gctcagtacgagaagggcctcaccactgacgacgagcgtcgtaccgagctcgtccgcatc
tggaccgaggccacggacgagatccagaaggagatgcgcgccaacttcccggaggacaac
accatcaaccgcatggtgtcgtccggtgcccgtggtaactggctgcagatccggaacatc
gcgggtatccgcggtctggtgaacaacccgaagggtgagatcatccctcgcccgatcatc
tcctcgtaccgcgagggtctgtcggtggcggagtacttcatcgccacgcacggtgcccgc
aagggcctcgccgacacggctctgcgtacggccgactcgggttacctcacccgtcgtctc
gtggacgtctcgcaggatgtcatcatccgcgaggaggactgcggcacgtcgaagggcctc
gagtacccgatcgccgaggccgacgccaacggcgtgctggtgcgcgacgcgaacgtcgag
aactcggtgttcgcccgcagcctggccgtcgacgtggtggcggaggacggcaccgtcctc
gcgcaggccggtcaggacgtcggcgacgtgctcatcgactcgctcgtcgaggcgggcgtc
acctccatcaaggtgcgctcggtcctcacgtgcgactcggcggtcggcgtctgcgcccgc
tgctacggtcgctcgctggcgacgggcaacctcgtcgacatcggcgaggccgtcggcatc
atcgcggcccagtcgatcggtgagcccggcacgcagctgacgatgcgcaccttccacacc
ggtggttccgcttcggcagacgacatcacgcagggtcttccccgcgtgcaggagctgttc
gaggcccgcaccccgaagggcgcgtcgcccatcgccgaggcggacggtcgcatcaccatc
gaggagaccgagaagcagaagaaggtcatcctcacgcccgacagcggcgacgagcaggtc
gtgtacccggtgctgaagcgtgcgacgcttctcgtcgaggacggccagcacgtcaaggtg
ggtgactccatccaggtcggaacgctcgacccgaaggagatcatgcgcgtgcagggcgcc
cgcgaggtgcagaagtacctcgtcggcggcgtgcagggcgtgtaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcggaaggtcaccgtg
gtcgaccacggcgagaccgacctgctgcctggcgagatggtcgacatgcgccgttaccag
gacatcaaccgcgcggcgatcgccgaggggaagcgtcctgcgtcgggtcgtccggagctg
atgggtatcacgaaggcgtcgctcgcgacggagtcgtggctgtcggccgcgtcgttccag
gagacgacgcgcgtcctcaccgaggccgccatgcagggcaagcgcgatccgctgatcggt
ctcaaggagaacgtcatcatcggaaagctcatccccgcgggcaccggcctgtcgaagtac
cgcgatgtcgtggtcgaggcgacggaggaggcgaagaccgagcggtaccccaaccgcatc
ttcgcgtccgacggcgcgtacgcggagggcgactactcgttcgtcgacttcgacgcgttc
acgaccgacgacttcacgcccgggacgtacaactga
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