Microbacterium oryzae: D7D94_08240
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Entry
D7D94_08240 CDS
T09900
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
moj
Microbacterium oryzae
Brite
KEGG Orthology (KO) [BR:
moj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
moj03016
]
D7D94_08240
Enzymes [BR:
moj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D7D94_08240
Transfer RNA biogenesis [BR:
moj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D7D94_08240
Prokaryotic type
tRNA splicing ligases
D7D94_08240
BRITE hierarchy
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GFIT
Motif
Pfam:
RtcB
BT_MCC_alpha
GTP_EFTU_D4
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QGU27660
UniProt:
A0A6I6E5G2
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All DBs
Position
1769625..1770794
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AA seq
389 aa
AA seq
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MERLSDRLLSWASLIDEQTVAQARTSSQMPFIHPHLALMPDAHLGLGATVGSVIPTRGAI
MPAAVGVDIGCGMIAVRTPFMRADLTGRDLGDLRRRIERAVPLSAGHANHKVTATAAPRV
AELERLAAEAGFDPAARAKGWRLQLGSLGSGNHFIEVSVDETDAVWMFLHSGSRGVGNRI
AQHHIAIAQRVCRDARIDLPNRDLAYLEEGSDEFAQYIRELRWAQRFALLNREEMMDRVA
EQLGRFLGTEVEELERINCHHNFTESEMHFGERVWVSRKGAILADAGRPGLIPGSMGTAS
YIVEGKGNALSLNSSPHGAGREYSRSAARRTFTREQLREAMAGIEYRDTDAFLDEIPQAY
KPIDRVMADAADLVTVRHTLRQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctgtcggatcgtctgctgtcgtgggcgagcctgatcgacgagcagaccgtc
gcgcaggcgcgcacgtcgtcgcagatgccgttcatccacccgcatctggcgctcatgccc
gacgcccatctcggactcggcgcgaccgtcggctcggtcatccccacgcgcggcgccatc
atgccggccgccgtcggcgtcgacatcggctgcggcatgatcgccgtgcgcacgccgttc
atgcgcgccgatctcaccgggcgcgacctcggcgacctgcgtcgacggatcgagcgcgcg
gttccgctctccgccgggcacgccaatcacaaggtcaccgccaccgccgcgccccgcgtc
gccgagctcgagcggctggcggccgaggcggggttcgatcccgcggcacgggcgaagggc
tggcgcctgcagctgggttccctcggcagcggcaaccacttcatcgaggtgtccgtcgac
gagacggacgcggtgtggatgttcctgcactccggctcgcgcggcgtgggcaatcgcatc
gcgcagcaccacatcgccatcgcgcagcgcgtgtgccgcgacgcgcggatcgacctgccg
aaccgcgacctcgcctacctcgaggagggcagcgacgagttcgcgcagtacatccgcgag
ctgcggtgggcccagcgcttcgcgctgctcaaccgcgaggagatgatggaccgcgtcgcc
gagcagctggggcgcttcctcggcaccgaggtcgaggagctcgagcgcatcaactgccac
cacaacttcacggagtcggagatgcacttcggcgagcgcgtgtgggtgtcgcggaagggc
gcgatcctcgccgatgcgggccgccccgggctcatccccggctcgatggggacggcgtcg
tacatcgtcgaggggaagggcaacgcgctgtcgctgaactcctcgccccatggcgccgga
cgggagtactcccgatccgccgcccgccgcaccttcacgcgcgagcagctgcgcgaggcg
atggccggcatcgagtaccgcgacaccgacgcgttcctcgacgagatcccgcaggcctac
aagcccatcgaccgcgtgatggccgacgcggccgacctcgtgaccgtgcggcacaccctg
cggcagctcgtcaacgtgaagggcgactga
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