Microbacterium oryzae: D7D94_09905
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Entry
D7D94_09905 CDS
T09900
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
moj
Microbacterium oryzae
Pathway
moj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
moj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7D94_09905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
moj03019
]
D7D94_09905
03400 DNA repair and recombination proteins [BR:
moj03400
]
D7D94_09905
Enzymes [BR:
moj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7D94_09905
Messenger RNA biogenesis [BR:
moj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D7D94_09905
DNA repair and recombination proteins [BR:
moj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D7D94_09905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
PcrA_UvrD_tudor
DUF3553
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QGU27944
UniProt:
A0A6I6E1D9
LinkDB
All DBs
Position
complement(2120209..2121852)
Genome browser
AA seq
547 aa
AA seq
DB search
MSPAVPRTAEIEETARERFGLEQLRPEQIEAIDAASQGRDVLAVWATGFGKSAVYQVTGA
LLPGITVVVSPLIALQEDQLIGLDDAPAAPHAVALNSARGARARREAWRQLEEGEAEYVL
LAPEQLAKEDVISALAKREISLLVIDEAHCITSWGHDFRPDYLLIGSLAERLGRPPVVAL
TATASTPVREEIMQRLGMRDPLVLVGDMDRVNIALDVRRHVDDAGKRHAVVEEVVGLPGP
GLIYTSTRRDTERYAAELAERGLRAAAYHAGLRVGERNRVHEEFRDGDLDVVVATSAFGM
GIDKEDVRFVVHADAPESIDAYYQELGRAGRDGGSARATLHYRPEDLGIRRFFASRGTDA
DDIRAVLGALRDGHHARQAVADAAGIPLRRTVALLALLSDTGSVRLNRRGASLRAHVDDA
EAVAAAFAHVEDRQRVEQSRIEMLRGYAETRRCRRQVLLGYFGQELADPCGNCDTCLEGH
AAETPDVEASGQESGYRVDDRVRHREWGDGTVMDVEDDRMTVFFESAGYRVLALELVEDE
GLVEHVG
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagcccggccgtgccgcgcaccgcggagatcgaggagaccgcgcgcgagcgcttcggc
ctcgagcagctgcgtccggagcagatcgaggcaatcgacgcggcatcgcaggggcgcgat
gtcctggccgtgtgggcgacgggcttcggcaagtcggcggtgtaccaggtgaccggagcg
cttctccccggcatcacggtggtggtctcgcccctcatcgccctgcaggaggatcagctc
atcggcctcgatgacgctccggcggctccgcatgccgtggcgttgaactccgcacgcggt
gcccgcgctcgccgcgaggcatggcggcagctggaggagggcgaggcggagtacgtgctc
ctcgcccccgagcagctcgcgaaggaggacgtgatcagcgcgctggcgaagcgcgagatc
tcgctgctcgtcatcgacgaggcgcactgcatcacctcctgggggcacgacttccgcccg
gactacctcctcatcgggtcgctcgccgagcgcctcggccgcccgcccgtcgtcgcgctg
accgccaccgcgtccacgcccgtgcgcgaggagatcatgcagcgcctcggcatgcgcgat
ccgctggtgctcgtgggcgacatggaccgcgtcaacatcgcgctggatgtccgtcgccac
gtcgacgacgccggcaagcggcacgcggtggtcgaggaggtggtggggcttcccggcccc
ggtctcatctacacctccacgcggcgcgacaccgagcgctacgcggcggagctcgcggag
cgcggactgcgcgcggccgcgtaccacgcgggtctgcgcgtgggcgagcgcaatcgcgtg
cacgaggagttccgcgacggcgacctcgacgtggtcgtggcgacgtcggcgttcggcatg
ggcatcgacaaggaggacgtgcgcttcgtcgtgcacgcggacgcgcccgagtcgatcgac
gcgtactaccaggagctcggccgagccggtcgcgacggcggctccgcccgcgccaccctg
cactatcggccggaggatctggggatccgccgcttcttcgcctcgcgcggaaccgacgcc
gacgacatccgcgccgtgctcggcgcgctgcgcgacgggcaccacgcgcggcaggcggtg
gccgacgccgcggggatcccgctgcgccgcacggtcgcgcttctcgcgctgctgtcggac
acgggatcggtgcgcttgaaccggcgcggcgcttccctgcgggcccacgtcgacgatgcg
gaggcggtggcggcggcgttcgcgcacgtcgaggacaggcagcgcgtcgagcagtcgcgc
atcgagatgctgcgcggttacgccgagacgcggaggtgccgtcgccaggtgctgctgggg
tacttcgggcaggagctcgccgacccctgcggcaactgcgacacgtgcctggagggccat
gcggccgagacgccggacgtcgaggcgtcggggcaggagagcggctaccgcgtggacgat
cgggtgcgtcatcgcgagtggggcgacggcaccgtgatggacgtcgaggacgaccgcatg
acggtcttcttcgagagcgccggctaccgggtgctcgcactcgagctcgtcgaggacgag
ggactcgtcgagcacgtcggctga
DBGET
integrated database retrieval system
