Methanothermococcus okinawensis: Metok_1141
Help
Entry
Metok_1141 CDS
T01534
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mok
Methanothermococcus okinawensis
Brite
KEGG Orthology (KO) [BR:
mok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mok03016
]
Metok_1141
Enzymes [BR:
mok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Metok_1141
Transfer RNA biogenesis [BR:
mok03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Metok_1141
Prokaryotic type
tRNA splicing ligases
Metok_1141
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEH07110
UniProt:
F8ANW9
LinkDB
All DBs
Position
complement(1158386..1159828)
Genome browser
AA seq
480 aa
AA seq
DB search
MKENMVKIKENVWELPKDYKKCMNVPGRVYLNDELFENMENDVLEQVANVACLPGIQKYS
LAMPDCHYGYGFCIGGVAAFDEKTGVISPGGVGFDINCGIRLVKTNLTKEDVQPKIKELV
NKLFKNVPSGLGSKGKIRITKNEIDEVLEEGVNWAIDNNYGWKVDKKYIEENGCVKEADA
SLVSDNAKKRGLPQLGSLGSGNHFLEIQYVDKIFDEEAAKVYGVEKNQVLVMIHTGSRGL
GHQICSDYLRYMEKASKKYNIHLPDRQLACAPITSEEGIRYFKAMNCGANYAWTNRQLIT
HWVRESFEEVFKTPAEDLEMNILYDVAHNIAKKEKHKINGKLKNVIVHRKGATRSFGPGC
DGIPEDYNKIGQPVIIPGDMGTASYLMHGTDIAMEETFGSTAHGAGRTLSRAGALKLYDS
NSVKAELERKGIYVMADSKGVIAEECPEAYKNIELVADVAHNSGISLKVSRMKPMGVVKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaatatggtgaagattaaagaaaatgtatgggagctcccaaaagattacaaa
aaatgcatgaatgttccaggtagagtttatttaaatgacgagctctttgaaaatatggaa
aacgatgtgcttgaacaggtagctaatgtagcctgtttgccaggcatccaaaaatattcc
ttagcaatgccggactgtcattacggctatggcttttgtataggtggagtggcagcattt
gacgaaaaaacaggagtaataagccccggaggtgtgggcttcgatattaattgcgggatt
cgacttgtaaaaaccaatcttacaaaagaagatgttcaacctaaaataaaggagctcgta
aataaactttttaaaaatgttccatcaggtcttgggagtaagggaaagataagaattaca
aaaaatgaaatagatgaagttcttgaagaaggggtaaattgggcaatagataataactac
ggatggaaagtggataaaaaatatattgaagaaaatggatgtgtaaaagaggcagatgct
tcattagtttcagataatgctaaaaagaggggacttccacagttaggttcattgggtagt
ggaaaccactttttagaaattcagtatgtggataaaatattcgacgaagaagctgcaaaa
gtgtatggtgttgaaaaaaatcaggtattagttatgattcatacgggttccagaggactt
gggcatcaaatatgttcagattaccttagatatatggaaaaagcttctaaaaaatacaat
atacacttaccggatagacagttggcatgtgctccaataacttctgaggagggtattaga
tacttcaaagctatgaactgcggtgcaaactatgcatggacaaataggcaacttataacg
cactgggtaagggaaagctttgaagaggtgtttaaaacaccagcggaagaccttgaaatg
aatatcctatacgatgtagcacataatatagctaagaaagaaaaacataaaataaacggt
aagttaaaaaatgtgattgtgcataggaagggtgccacaaggtcatttggaccaggttgt
gatggcatacctgaggattataataaaataggacagcctgtaattattccaggagatatg
ggaacagcatcctatttaatgcatggaacagatattgctatggaggaaacatttggttca
actgcccatggtgctggaagaactctcagtagagcaggagctctaaaattatatgactca
aatagtgttaaagctgagctcgaaagaaagggcatatatgttatggctgattcaaaaggt
gtaatagctgaggaatgtccagaggcatataaaaacattgaattagttgcagatgttgcc
cataactcaggaatatctttaaaagtaagtaggatgaaacctatgggtgtagttaaggga
taa
DBGET
integrated database retrieval system
