Methanothermococcus okinawensis: Metok_1385
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Entry
Metok_1385 CDS
T01534
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mok
Methanothermococcus okinawensis
Pathway
mok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metok_1385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mok03019
]
Metok_1385
03009 Ribosome biogenesis [BR:
mok03009
]
Metok_1385
Enzymes [BR:
mok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metok_1385
Messenger RNA biogenesis [BR:
mok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metok_1385
Ribosome biogenesis [BR:
mok03009
]
Prokaryotic type
rRNA helicases
Metok_1385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AEH07350
UniProt:
F8AJZ4
LinkDB
All DBs
Position
complement(1430953..1432560)
Genome browser
AA seq
535 aa
AA seq
DB search
MTMAEFKELGLSENVINALEKKGFTSPTPIQKKAIPILLKGNLDIIGQAQTGTGKTAAFG
IPMIETLKEDSKDVQALVLTPTRELAIQVSDEINSLKGNKKLNILPVYGGQSITEQTRKL
KRGVDIVVGTPGRILDHLKRGNLKLHNVSYVVLDEADEMLDMGFIDDVEEILRYTNPDKK
MLLFSATLPRKIMGLAKKHMRKYEVISVKKEQLTTDMVEQIYYDVRSSDKFEALCRTIDM
NNDFYGLVFCKTRADVNDIANKLANRGYKAEGIHGDIVQNQRERILSRFKNKRSNILVAT
DVAARGIDINNLTHVINYSLPQNPESYVHRIGRTGRAGKKGTAITFVQPDEFRKLKYIKK
IAKTDIEKRELPTVEDIIHAKKSSVIENISKIVSSGEVSQEYLDIAKKLLEENNNDAEKV
IASLLKYSLNDELNEKKYGKIKHSRNSNVKEVKEGQTRLFIALGKKDGMNPRKLVEYIED
ETGVRGRYIDDVAVFENFSYITVSSRDADKIMKTLGRTRRNGKSIVDYAKQRRNY
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgactatggcagaatttaaagaattaggattatctgaaaatgtaataaatgcattagaa
aaaaaaggattcacaagtccaacaccaattcaaaagaaagcaatacctatcttattaaaa
ggaaacttggatattataggacaggcacaaactggaactggaaaaactgcggcatttgga
ataccaatgattgaaacacttaaagaggattcaaaggatgttcaggcacttgttcttaca
ccaacaagggagctcgcaatacaggtttcagatgagataaactcattaaaaggaaataaa
aagttaaatatacttcctgtttatggggggcagtcaataactgaacagacaaggaaatta
aaaagaggggttgatattgttgtaggaactcctggaagaatattggaccacttaaaaaga
ggaaatctaaaattacacaatgtttcttatgttgtccttgatgaagctgatgaaatgctt
gatatgggctttatagatgatgttgaggaaattttaagatatacaaaccccgataaaaaa
atgcttcttttctctgccacattacctaggaaaattatgggattggctaaaaaacatatg
agaaaatatgaagtaataagtgttaaaaaggagcaattgacaacagatatggtagaacag
atttactatgatgttaggagctccgataaatttgaagcattgtgtagaacaatagatatg
aacaatgatttttacggattggtattctgtaaaacaagggccgatgtaaatgacatagca
aataagcttgcaaatagaggatataaggcagaaggtattcatggagatattgttcaaaat
cagagagaaagaatattatccagatttaaaaacaaaaggtcaaatatccttgtagcaaca
gatgttgcagcaagaggtattgatataaataatcttacccatgttataaattattccctt
ccacaaaatccagaatcttatgttcatagaatcggaagaacaggaagagctggaaaaaaa
ggaacagcaattacatttgttcaaccagatgaatttagaaaattgaaatacataaagaag
atagcaaaaacagatattgaaaaaagggagctcccaactgtggaagatattatccatgct
aaaaagtcatcagttattgaaaatatttcaaagattgtgagctcaggtgaggttagtcaa
gaatatcttgatattgctaaaaaattattggaagaaaataacaacgatgccgaaaaagtt
atagcatcccttttaaaatatagtttaaacgatgaattaaatgaaaaaaaatatggcaaa
atcaagcacagtagaaatagtaatgttaaagaagttaaagagggtcagacaagattattt
atagctcttggaaaaaaagatggaatgaaccctagaaaacttgtagagtatattgaagat
gaaacaggtgtaagaggtaggtatatagatgatgttgcagtatttgaaaacttctcatac
attacagtttcttcaagggatgccgataagattatgaagacacttggtagaactagaaga
aatggaaagtctattgtagattatgctaaacagagaaggaactattaa
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