Methanobrevibacter olleyae: YLM1_0842
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Entry
YLM1_0842 CDS
T04385
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
mol
Methanobrevibacter olleyae
Pathway
mol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YLM1_0842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mol03019
]
YLM1_0842
Messenger RNA biogenesis [BR:
mol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
YLM1_0842
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
YLM1_0842
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
S1_RRP4
RRP40_S1
KH_2
Toxin_R_bind_N
S1
KH_PNO1_2nd
KH-I_KHDC4-BBP
KH_KhpA-B
KH_KRR1_2nd
GNAT_acetyltran
Motif
Other DBs
NCBI-ProteinID:
AMK15399
UniProt:
A0A126R0B7
LinkDB
All DBs
Position
complement(1011634..1012905)
Genome browser
AA seq
423 aa
AA seq
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MIYVNEKDLVVPGELLAEDDYYSGRGTFEDDGKICSKLLGLVSLRNKKISVIPLKSKYLP
KKGDVVIGKIDDVRFSMWGVDINSPYAGILPASEVFGREKKELSRVFNIGDVLFLRIVDV
DEVKKVKLGLKGRGMGKFKGGVIIDIAPTKVPRLIGKKGSMINMIKDKTGCKIIVGQNGL
VWIKGNEDMEQIVKNIIKLIEREAHTSGLTDRVKNKLCLLIDGELPQEEEEVEQVGQVEQ
EYREDLFEEGLKKPELQDFREELEKELAEELSEEELENIESGDFDDIEEDDFDADSEDEV
SEDFEEERFDDSEDFDDELENVINEAISEDEDSEEDILDDEEPKEDSEENVEENSDDEDS
DKDSDDEDSDDEEDKEEKSKKPKFLDTFEYINEQKKKNKSSFDLSRADNSKSPTLNISQR
RGI
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgatatatgtgaatgaaaaagatttagttgttcctggagaattattagcagaggatgat
tattattcaggaagaggaacctttgaagatgatggaaaaatatgttccaaactcttaggt
ttagtttctttaagaaataagaaaataagtgtaattcctttaaaaagcaaatatcttcct
aaaaaaggagatgtagttattggtaaaatcgatgatgttagattttcaatgtggggagta
gatattaactcaccatacgctggtattttacctgcatctgaagtatttggaagagagaaa
aaggaattaagtagagtatttaatattggggatgttcttttcttaagaattgttgatgtt
gatgaagttaaaaaggttaaattaggattaaaaggccgtggaatgggcaaattcaaaggt
ggagtcattattgatattgctccaactaaagtacctcgtttaattggtaaaaaaggttct
atgattaacatgattaaagataaaactggctgtaaaattatagttggtcaaaatggtctt
gtttggataaaaggtaatgaagacatggaacaaattgttaaaaatatcatcaaattaatc
gaaagagaagcccatacctctggtttaactgatagagttaaaaacaaactttgtttactt
attgatggagaattacctcaagaagaggaagaagtagaacaagtaggacaagtagaacaa
gaatatagggaagatctatttgaagaaggcttgaaaaaacctgaacttcaggatttcaga
gaagaacttgaaaaagaattagctgaagagttatctgaagaagaattagaaaatattgaa
tctggtgactttgatgatattgaggaagatgattttgatgctgattctgaagatgaggtt
tctgaagattttgaagaagaaagatttgatgattctgaagattttgatgatgagcttgaa
aatgtaattaatgaagctatttctgaagatgaagattctgaagaagatattcttgatgat
gaggaacctaaagaagattctgaagaaaatgtagaagaaaattctgatgatgaagattct
gacaaagattctgatgatgaagattctgatgatgaagaagataaagaagaaaagtctaaa
aagcctaaatttttagatacttttgaatatattaatgagcaaaaaaagaaaaataaatct
tcttttgacttaagtcgtgcagataattctaaatctcctactttaaacatttcacaaaga
agaggtatttag
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