Methanobrevibacter olleyae: YLM1_1557
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Entry
YLM1_1557 CDS
T04385
Name
(GenBank) replication factor A
KO
K07466
replication factor A1
Organism
mol
Methanobrevibacter olleyae
Pathway
mol03030
DNA replication
mol03420
Nucleotide excision repair
mol03430
Mismatch repair
mol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YLM1_1557
03420 Nucleotide excision repair
YLM1_1557
03430 Mismatch repair
YLM1_1557
03440 Homologous recombination
YLM1_1557
03460 Fanconi anemia pathway
YLM1_1557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mol03000
]
YLM1_1557
03032 DNA replication proteins [BR:
mol03032
]
YLM1_1557
03400 DNA repair and recombination proteins [BR:
mol03400
]
YLM1_1557
Transcription factors [BR:
mol03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
YLM1_1557
DNA replication proteins [BR:
mol03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
YLM1_1557
DNA repair and recombination proteins [BR:
mol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
YLM1_1557
MMR (mismatch excision repair)
YLM1_1557
DSBR (double strand breaks repair)
HR (homologous recombination)
YLM1_1557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
REPA_OB_2
Rep_fac-A_C
OB_MEIOB_N
SHLD2_OB1
Zn_ribbon_DUF2089
Zn_Ribbon_TF
DZR
UPF0547
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
AMK16112
UniProt:
A0A126R218
LinkDB
All DBs
Position
complement(1859332..1861785)
Genome browser
AA seq
817 aa
AA seq
DB search
MDKEFFNGMNLAEDINEEDFQYIVEGWEKIQDLLSKDEFISKFNKVKEEYKDASFFSDKD
FIDMVVNPFTGEKAEPISNFDNETPKTISEVEPGNNGFSIVARVMSISNPKIFTTRKGEA
GKLANMQIADNTGEVRLVLWTENIKHLKHISEGDIVEITDIDCKDGFRGGKEFSLRPRSL
LRTIDETSENYPKNIDAFPVYEENIISIEGIEPDEKVSIIGRLIRVPTPHSYESNGKKGK
VTSLEIQDNTGKISYTLWNNDVKLVSSLDLKEGDIVKILNEQSRERNGEVSLSHWDGRIL
KVEGDFDIPEYEENIIKIGDAQEIKDVTLIGIVTKIQDTIQFNRQDGTKGFVKSIEITDD
TGSIRVTLWGDDTKLKVSKGDILKIIGGNIEYDDYASSGYRVNTNWNSELKVNPEGSEDL
AEELKDILDKLGPIPIGEIQDHEDDGEEVDIIGRLITINDSHSFQRDDGSTGVVRSGDIA
DSTGMVRISFWDEKAEASYGIGKAYQVENARTRLGMYAVELNAGKTTRVIELNDAESSDL
PSFEELEETVYETKKIDDLDEDDMNIKVVARILEMEDTREFPRQDGTKGLVRNMTIGDES
GFISVTLWDDKTNLPYDINEAIKIQNPRVNYNDRSNRLDLSIGNSTNILQPSYKELTNLP
DIKELQDTLYTSKDIASLELEDRNVKIEGTFSNPYSERILIPKCPICNHTLDVDEEECSE
CGNIIDEPKYLLMLPGKLNDDTGEIQITFFNDLVEELIGMAHDDIVAQYEEEGDFGFLET
KINDLEGRTLEVIADITYNNYDEEIRLRPKKILKNEL
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaatttttcaatggaatgaatttagctgaagatattaatgaagaagatttc
caatacatagtagaaggttgggagaaaattcaagatcttttatctaaagatgaattcatt
agtaaatttaataaagttaaagaagaatacaaagatgcttctttttttagtgataaagac
ttcatagacatggtggtaaatccatttactggagaaaaagcagaacctatatctaatttt
gataatgaaactcctaaaacaatttctgaagttgaacctggtaataatggcttcagtatt
gttgcaagagtaatgagtatttctaatccaaaaatatttactacaagaaaaggagaggct
ggaaaacttgctaatatgcaaattgcagataatactggtgaagtaagacttgttctttgg
acagaaaatattaaacatcttaaacatatttctgaaggagatattgtagaaatcactgat
attgactgtaaagatggatttagaggaggtaaggaattttcattacgtcctagatcatta
cttcgaacaattgatgaaacaagtgaaaactatccaaagaatattgatgctttcccagtt
tatgaggaaaatattatttcaattgaaggtattgagcctgatgagaaggtaagtattatt
ggaagattgataagagttccaactccacattcttatgaaagtaatggtaagaaaggaaaa
gtcacttctcttgagattcaagataatacaggtaaaatttcctatactttatggaataat
gatgttaaattagttagtagccttgatttaaaagaaggagatattgttaaaattctcaat
gaacaatctagagaaagaaatggagaagtttcattatctcactgggacggtagaatcctt
aaagttgagggagacttcgatattccagagtatgaagaaaatattattaaaattggtgat
gctcaagagattaaagatgttactttaattggtattgtaactaaaatccaagatactatt
caatttaatagacaagacggaacaaaaggttttgtaaaatcaattgaaattactgatgat
accggttctataagagttactctctggggtgatgatactaaattgaaagtatctaaagga
gatattcttaagatcattggtggaaatattgaatatgacgattatgcaagtagcggatat
agagtaaatactaattggaatagtgaattaaaagtaaatcctgaaggaagtgaggattta
gctgaagaattaaaggatattttagataaattgggaccaatacctattggtgaaattcaa
gaccatgaagatgatggtgaagaagtagatattattggcagattaattaccattaatgat
agtcattccttccaaagagatgatggatctactggtgttgttcgctcaggtgatattgct
gattctactggaatggttagaatttccttttgggatgaaaaggcagaagcttcttacggc
ataggtaaagcatatcaagttgaaaatgctagaactagattaggtatgtatgctgttgaa
cttaatgctggtaaaacaaccagagtaattgagcttaatgatgctgaatcatctgattta
ccttcatttgaagaattagaagaaacagtttatgaaactaagaaaattgatgatttagat
gaagatgatatgaatattaaagttgttgcaagaatattagaaatggaagatactcgtgaa
ttccctagacaagatggaactaaaggtttagttagaaatatgaccattggtgatgagtct
ggatttatatctgttactttatgggatgataaaactaatttaccttatgatattaatgag
gcaattaaaattcaaaatcctcgtgtcaactataatgatagaagcaatcgcttagatttg
tctataggtaattcaactaatattttacaaccttcatataaagaattaacaaatcttcca
gatattaaagaattacaagatactttatacacttctaaagatattgcaagccttgaacta
gaagatagaaatgttaaaatagaaggtactttctctaatccatattctgaaagaatctta
attcctaaatgccctatctgtaatcatacccttgatgttgatgaggaagaatgttctgaa
tgtggaaatataattgatgaaccaaaatatcttttaatgcttcctggaaagcttaatgat
gatactggtgaaattcaaatcactttctttaatgatttagttgaagagttaattggtatg
gcacatgatgatatagttgctcaatatgaagaagaaggggatttcggattcttagaaact
aaaattaatgatcttgaaggtagaactttagaagtaattgctgatataacttataataat
tatgatgaggaaataagacttagacctaagaaaattcttaaaaatgagttataa
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