Modestobacter sp. L9-4: KUM42_03770
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Entry
KUM42_03770 CDS
T10178
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mom Modestobacter sp. L9-4
Brite
KEGG Orthology (KO) [BR:
mom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mom03016
]
KUM42_03770
Enzymes [BR:
mom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KUM42_03770
Transfer RNA biogenesis [BR:
mom03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KUM42_03770
Prokaryotic type
tRNA splicing ligases
KUM42_03770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QXG76683
LinkDB
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Position
803421..804584
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AA seq
387 aa
AA seq
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MEKINGRLLNWASILEPTTREQAVRTAAMPFVYPHLALMPDAHLGKGATVGSVIPTEGAI
IPAAVGVDIGCGMMAVRTQFSADDLAGRPLDVLHGQISRSIPLSAGGRNSHVRATAAARV
EELRAMAGVEQADQAVGHWPQQLGSLGSGNHFIEVSLDEADRVWLFLHSGSRGVGNKLAQ
RHITRAQELCRQRFIRLADPDLAYLVEGDPEFDAYIEALRWAQRFAFLNREEMMDRVAEQ
VGRFLHADVERLETVNCHHNYTERERHLGREVWLTRKGAISAQRGQLGLIPGSMGTASYV
VAGLGSVPALMSAPHGAGRNHSRNAARRLFTRSDLDARMTGIAWGHSDAFLDEHPDAYKP
IDQVMADAADLVEVRHTLRQVVNVKGD
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcaacggacgcctgctcaactgggcgtccatcctcgagcccaccacccgg
gagcaggcggtgcgcaccgcggcgatgccgttcgtgtacccgcacctggcgctcatgccc
gacgcccacctgggcaagggcgcgaccgtcggctcggtcatcccgaccgagggcgcgatc
atcccggccgcggtaggggtcgacatcggctgcgggatgatggccgtgcgcacgcagttc
agcgccgacgacctcgccggccgcccgctcgacgtgctgcacgggcagatctcccgctcg
atcccgctgtcggcgggaggccggaactcccacgtccgggccaccgctgcggcacgggtc
gaggagctccgcgcgatggccggcgtcgagcaggccgaccaggcggtgggccactggccg
cagcagctgggctcgctcggctcgggcaaccacttcatcgaggtgtcgctggacgaggcc
gaccgggtctggctcttcctgcactccggctcgcggggcgtgggcaacaagctggcccag
cggcacatcacgcgggctcaggagctgtgccgccagcggttcatccgcctggccgacccg
gacctggcctacctcgtggagggcgacccggagttcgacgcctacatcgaggcgctgcgc
tgggcacagcggttcgccttcctcaaccgcgaggagatgatggaccgggtggccgagcag
gtcggccggttcctgcacgccgacgtcgagcggctcgagaccgtgaactgccaccacaac
tacaccgagcgggagcggcacctcggccgcgaggtgtggctgacccgcaagggcgcgatc
tccgcccagcgcggccagctggggctcatccccggctcgatgggcacggcgtcctacgtc
gtggccggcctgggcagtgtcccggcgctgatgtcggcgccgcacggcgcgggccgcaac
cactcgcggaacgcggcccggcggctgttcacccggtccgacctcgacgcccggatgacc
gggatcgcgtggggccactccgacgcgttcctcgacgagcaccccgacgcctacaagccg
atcgaccaggtcatggccgacgcggcggacctcgtggaggtccggcacaccctgcgccag
gtcgtgaacgtcaagggcgactga
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