Modestobacter sp. L9-4: KUM42_14170
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Entry
KUM42_14170 CDS
T10178
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mom Modestobacter sp. L9-4
Pathway
mom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KUM42_14170 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mom03400
]
KUM42_14170 (mfd)
Enzymes [BR:
mom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUM42_14170 (mfd)
DNA repair and recombination proteins [BR:
mom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KUM42_14170 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QXG74984
LinkDB
All DBs
Position
3034567..3038115
Genome browser
AA seq
1182 aa
AA seq
DB search
MSLRGVLDVVLTDPGMASVVQHAGQAQLAVTAPPSVQPLVAAALAARRPGGAAVPVLVVT
AGERDADALASLLRCFVPDSRVEVFPAWETLPHERLSPRADTVGRRLAVLRDLTHPGANG
GIDVLVAPVRSVLQPLAPGLGDLVPVELAPGQSAELDDVAQALSDAAYVRVELVEKRGEF
AVRGGLLDVFPPTEQHPVRVEFWGDEVDELRYFSAADQRSLDERPERLWAPPCRELLLTD
EVRARAVQLAVDHPELAEVAGKLAEGIAVEGMESLIPALIGGEAMQLLTDLVPAGTHVLV
CDPERVRSRAADLVRTAEEFLAASWQTAAEAGQAPIDLGASSFQDLGDVEDAARGRGLPW
WTTGTFTLATEDDEQHVTLDATGVERFHGDQERAFEALRTWGRDGWRVALTFAGPGPAQR
AADQLTEADLGARLVPGIEDAPTAGAPFVTQGNLEAGFAFPAVGLALLTEGDLTGQRGTS
MKDATKMPARRRNAVDLVQLQPGDLVVHEQHGIGRYVEMVSRTVHGGQRDYLIVEYAPGK
RNQPPDRLFVPTDALDQLTRYVGGEAPSLSKLGGADWQKTKASARKAVKQIAAELIRLYS
ARMASKGHAFGPDTVWQRELEDAFPFQETPDQLAAIDEVKADMRQPVPMDRIICGDVGYG
KTEIAIRAAFKAVQDGKQVAVLVPTTLLANQHFKTFSERMAQFPVTVAVLSRFQSTTESN
ETLRKLADGEVDILVGTHRLLQPTTRFKDLGLVIVDEEQRFGVEHKEYLKTMRTAVDVLS
MSATPIPRTLEMSLTGIREMSTILTPPEERHPVLTYVGAWEDKQMAAAIRRELLRDGQVF
VIHNRVQSIDKAAAKIRNLVPEARIAVGHGQMKEHELEKIMVGFWEKEYDVLIATTIVES
GLDIPNANTLIVDRADMFGLSQLHQIRGRVGRGRERAYAYFTYDPTRPLTETSVDRLTTI
ANNTDLGAGMAVAMKDLEIRGSGNLLGGEQSGFIAGVGFDLYVRLVGEAVSDYRAQATGE
SPAVEPADVRVDLPVDAHLPHDYLPGERLRMEAYRKVASVQDDEQAQAVLDELTDRYGPA
PDPVLNLLAVARFRAAMRALGVTEVSMQGRNVRVGPVELRESQVMKLSRLAEGASYKEAV
RTVSIKVPIGPDRRTPLRDVALLEKLHALLTAVLAQPVAVAS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctgcgcggcgtgctcgacgtcgtcctgaccgaccccggcatggcctcggtggtg
cagcacgcggggcaggcccagctggcggtcacggcaccgccctcggtccagccgctggtg
gccgccgccctggctgcccgccgccctggtggcgccgccgtcccggtgctggtggtcacc
gccggcgagcgggacgccgacgcgctggcctcgctgctgcgctgcttcgtgcccgactcc
cgggtcgaggtcttcccggcgtgggagacgctgccgcacgagcggctgagcccccgcgcg
gacaccgtcggccgccggctggccgtgctgcgcgacctgacccaccccggcgccaacggc
gggatcgacgtcctggtcgccccggtgcgcagcgtgctgcagccgctggccccgggcctg
ggcgacctggtgccggtcgagctggcgccgggccagtccgccgagctcgacgacgtggcg
caggcgctgtccgacgccgcttacgtgcgggtggagctggtcgagaagcggggcgagttc
gctgtccgcggtgggctgctcgacgtcttcccgcccaccgagcagcacccggtgcgcgtg
gagttctggggcgacgaggtcgacgagctgcggtacttctccgccgccgaccagcgctcc
ctcgacgagcgccccgagcggctgtgggccccgccgtgccgtgagctgctgctcaccgac
gaggtgcgcgcccgcgccgtccagctggcggtcgaccacccggagctcgccgaggtcgcc
ggcaagctggccgagggcatcgccgtggagggcatggagtccctcatccccgccctgatc
ggcggcgaggcgatgcagctgctcaccgacctggtgcccgccggcacgcacgtgctggtc
tgtgaccccgagcgggtgcgcagccgcgccgcggacctggtgcgcaccgccgaggagttc
ctcgccgcctcctggcagaccgccgccgaggccggccaggcgccgatcgacctgggcgcc
tcctccttccaggacctcggcgacgtcgaggacgccgcccgcggtcgcggcctgccctgg
tggaccaccggcaccttcaccctcgcgacagaggacgacgagcagcacgtgacgctggac
gccaccggcgtcgagcgcttccacggcgaccaggagcgcgccttcgaggcgctgcggacg
tggggccgcgacggctggcgggtggcgctgacgttcgcgggccccggccccgcccagcgc
gccgccgaccagctcaccgaggccgacctgggcgcccggctcgtcccgggcatcgaggac
gccccgaccgccggcgcgccgttcgtgacccaggggaacctggaggccgggttcgcgttc
cccgcggtcgggctggcgctgctcaccgagggcgacctcaccggccagcgcggcacctcg
atgaaggacgccaccaagatgccggcccgccggcgcaacgccgtggacctggtgcagctg
cagcccggtgacctggtggtgcacgagcagcacggcatcggccggtacgtggagatggtc
agccgcaccgtgcacggcggccagcgcgactacctcatcgtcgagtacgccccgggcaag
cggaaccagccgccggaccggctcttcgtgcccaccgacgccctggaccagctgacccgc
tacgtcggcggcgaggccccgtcgctgtcgaagctgggtggcgcggactggcagaagacg
aaggcctcggcccgcaaggcggtcaagcagatcgccgcggagctgatccggctgtactcc
gcccggatggccagcaagggccacgccttcggcccggacaccgtctggcagcgcgagctc
gaggacgccttcccgttccaggagaccccggaccagctggccgcgatcgacgaggtcaag
gccgacatgcgccagcccgtgccgatggaccggatcatctgcggcgacgtcggctacggc
aagaccgagatcgccatccgggcggcgttcaaggcggtgcaggacggcaagcaggtcgcc
gtcctggtgccgacgacgttgctggccaaccagcacttcaagacgttctccgagcggatg
gcccagttcccggtcaccgtcgcggtgctctcgcgcttccagtcgacgaccgagtccaac
gagacgctgcgcaagctggccgacggcgaggtcgacatcctggtcggcacgcaccggctg
ctgcagcccaccacccggttcaaggacctcgggctggtgatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagtacctgaagacgatgcggacggcggtcgacgtcctgtcg
atgtccgcgacgccgatcccgcgcaccctggagatgagcctcaccggcatccgggagatg
tcgacgatcctcaccccgccggaggagcggcacccggtgctgacctacgtcggcgcctgg
gaggacaagcagatggccgccgccatccgccgcgagctgctgcgcgacggccaggtgttc
gtcatccacaaccgggtgcagtcgatcgacaaggccgcggccaagatccgcaacctggtg
cccgaggcccgcatcgccgtgggccacgggcagatgaaggagcacgagctcgagaagatc
atggtcggcttctgggagaaggagtacgacgtcctgatcgccacgaccatcgtcgagtcg
ggcctggacatccccaacgccaacaccctgatcgtcgaccgggccgacatgttcggcctc
tcccagctgcaccagatccgcgggcgcgtgggccgtggccgcgagcgcgcctacgcctac
ttcacctacgacccgacgcggccgctgaccgagacctcggtcgaccggctgaccaccatc
gccaacaacaccgacctcggggccggcatggcggtggcgatgaaggacctggagatccgc
ggctcgggcaacctgctgggcggcgagcagtccgggttcatcgccggcgtcggcttcgac
ctctacgtgcggctggtcggtgaggcggtgagcgactaccgcgcccaggcgacgggggag
tccccggcggtggagccggccgacgtccgggtcgacctgcccgtcgacgcgcacctgccg
cacgactacctgcccggcgagcggctgcggatggaggcctaccgcaaggtcgccagcgtg
caggacgacgagcaggcgcaggccgtgctcgacgagctcaccgaccgctacggccccgcg
cccgacccggtgctcaacctgctcgccgtggcccggttccgcgcggcgatgcgggcgctg
ggggtcaccgaggtgtcgatgcagggccgcaacgtccgcgtcgggccggtcgagctgcgc
gagtcccaggtgatgaagctgtcccgcctcgccgagggcgccagctacaaggaggcggtg
cgcaccgtgtcgatcaaggtccccatcgggcccgaccgccgcaccccgctgcgggacgtc
gccctgctggagaagctgcacgcactcctcaccgccgtcctcgcccagcccgtcgccgtc
gccagctga
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