Modestobacter sp. L9-4: KUM42_19625
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Entry
KUM42_19625 CDS
T10178
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mom Modestobacter sp. L9-4
Brite
KEGG Orthology (KO) [BR:
mom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mom03019
]
KUM42_19625 (hrpB)
Enzymes [BR:
mom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KUM42_19625 (hrpB)
Messenger RNA biogenesis [BR:
mom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KUM42_19625 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
CON_HrpB
AAA_22
AAA_30
AAA_19
AAA_11
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QXG75944
LinkDB
All DBs
Position
complement(4143494..4145962)
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AA seq
822 aa
AA seq
DB search
MLPPTGTPGTDLPVRSVLQDLDAALDRGGAAVLVAPPGTGKTTLVPLALADRLPGRILVA
EPRRVAARAAARRMAALLGEPVGRSVGYSVRGDSQRSAATRVEVVTTGLLVRRLQADPEL
PGIDAVVLDECHERALDTDLALAFTLDVRGSLRPELELLAMSATAQADRLAELMGHAPVV
AATGSLHDVEPVWCPPSPPVAPAHGLHVDPRLLAAVADTVRRALAETSGDVLVFLPGAAE
IGRVAGLLSGIDADVRPLHGRLPSADQDAALTAGPRRRVVLSTDVAETSLTVPGVRTVVD
AGLARVPRYDVARGLGSLVTVRVSRAAATQRAGRAGREAPGRVYRLWSAAEHDRLPAAPE
PEIAVADLTGLALELACWGEPDGTGLALPDTPPDAAFTVARATLRQLGAVDDAGRVTPRG
RSLTAVGAHPRLARALLDGTPLVGRRRAAEVVALLSSDVPSRSDDLVSDWREVRRSRDGR
WRDEVARLTRAAPDAPDTRLPDDVAAGLVVGLAHPEWLARRRPGTERTYLLAAGTGAELA
PGTALAGAPWLAVAAADRAPGRRDARVRTAVAVDEATALEAGAAAHTDGPEVTWRDGDVS
AARVERLGAIVLAERPLPDPDPAAVTAALAEGLRREGLALLRWTPAATALRERLAAARAG
LGDPWPAVDDESLLAALGQGPALSGARSRRDLTRVDVVAALRSLLPWELAGRLDELVPER
VQVPTGSAVRVDYSDPDVPTLSARVQELFGWAAAPVVAGRPLRLQLLSPASRVVATTADL
AGFWVTGYPAVRSELRGRYPRHPWPEDPASAAPTRRAKPRGT
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
gtgctgccaccgaccgggacgccggggaccgacctccccgtgcgttcggtcctccaggac
ctggacgccgccctcgaccgcggtggcgccgccgtcctggtcgccccgcccggcaccggc
aagacgacgctcgtgccgctcgcgctggccgaccggctccccggtcgcatcctggtggcc
gagccgcgccgggtcgcggcccgcgccgccgcccggcggatggccgccctgctcggtgag
ccggtgggccgctcggtcggctacagcgtgcgcggggactcccagcgcagcgccgccacc
cgggtcgaggtggtcaccaccgggctgctggtgcgccggctgcaggccgacccggagctg
cccggcatcgacgccgtggtgctcgacgagtgccacgagcgcgccctggacaccgacctc
gcactggcgttcaccctcgacgtccgcggctcgctgcgcccggagctggagctgctggcc
atgtcggcgacggcgcaggccgaccggctggccgagctgatggggcacgccccggtcgtg
gcggccaccgggtcgctgcacgacgtcgagccggtgtggtgcccgccctctcccccggtc
gcgccggcgcacgggctgcacgtcgacccgcggctgctggctgcggtggccgacaccgtg
cgccgggcgctggccgagaccagcggcgacgtcctggtcttcctgcccggcgccgccgag
atcggccgggtcgccgggctcctgtccgggatcgacgccgacgtccggccgctgcacggt
cggctgcccagcgccgaccaggacgccgcgctcaccgccgggccgcggcgacgggtggtg
ctgtccaccgatgtcgccgagaccagcctgaccgtccccggcgtgcgcaccgtggtcgac
gccgggctcgcccgggtgccgcgctacgacgtcgcccgcgggctcggctccctggtcacc
gtgcgggtgtcgcgggccgccgccacccagcgggccggtcgcgccgggcgcgaggcgccg
ggccgggtgtaccggctgtggtcggccgccgagcacgaccggctgcccgccgcgcccgag
ccggagatcgccgtcgccgacctgaccggcctggcgctggagctggcctgctggggcgag
cccgacggcaccgggctggccctgcccgacaccccgccggacgccgcgttcaccgtcgcc
cgcgccaccctgcgccagctcggtgcggtggacgacgccggccgggtcaccccgcgcggg
cggtcgctgaccgcggtcggtgcacacccgcggctggcccgggcgctgctggacggcaca
ccgctggtcggccggcgccgggccgcggaggtggtcgcgctgctgtcctccgacgtcccg
tcccgctccgacgacctggtgtccgactggcgcgaggtccgccggagccgcgacgggcgc
tggcgcgacgaggtggcccggctgacccgcgccgccccggacgccccggacacccggctg
cccgacgacgtcgccgccggcctggtcgtggggctggcgcaccccgagtggctggcacgc
cgccgcccgggcaccgagcgcacctacctgctggccgccggcaccggtgccgagctcgcc
ccgggcaccgcgctggccggtgcaccctggctggccgtcgccgcggccgaccgggcgccg
ggacgacgcgacgcccgggtccgcaccgcggtcgccgtcgacgaggccaccgcgctggag
gccggggcggccgcgcacaccgacggcccggaggtcacctggcgggacggcgacgtctcc
gccgcccgcgtcgaacggctcggtgcgatcgtgctggccgagcgcccgctgcccgacccc
gacccggccgcggtcaccgccgccctggccgagggactgcgccgcgagggcctggccctg
ctgcgctggacgccggcggccaccgcgctgcgcgaacggctcgctgcggcccgtgccggg
ctcggcgacccctggccggccgtggacgacgagtcgctgctggccgcgctgggacagggc
ccggcgctgtccggcgcccgcagccgccgcgacctgacccgggtcgacgtcgtcgccgcg
ctgcgctccctgctgccgtgggagctggccggccggctcgacgagctggtgcccgagcgc
gtgcaggtgccgaccgggtccgcggtgcgcgtcgactactccgacccggatgtgccgacg
ctgtccgcgcgcgtgcaggagctgttcggctgggctgcggcaccggtggtcgccggccgg
ccgttgcggctgcagctgctctcccccgcttcccgggtcgtcgccaccaccgccgacctg
gccgggttctgggtcaccggctacccggccgtgcgcagcgagctccgcggccggtacccg
cgccacccgtggccggaggacccggcgtccgccgcgccgacccgccgcgccaagccccgc
ggcacctga
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